Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   D3Z18_RS05590 Genome accession   NZ_CP032316
Coordinates   993976..994413 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 988976..999413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS10035 - 989598..990106 (+) 509 Protein_1078 sensor histidine kinase KdpD -
  D3Z18_RS10040 - 990164..991288 (+) 1125 WP_250482663.1 DUF4118 domain-containing protein -
  D3Z18_RS05575 (D3Z18_05575) uvrB 991390..993363 (-) 1974 WP_038401182.1 excinuclease ABC subunit UvrB -
  D3Z18_RS05580 (D3Z18_05580) - 993517..993747 (+) 231 WP_002852327.1 hypothetical protein -
  D3Z18_RS05585 (D3Z18_05585) - 993737..993979 (+) 243 WP_002854947.1 hypothetical protein -
  D3Z18_RS05590 (D3Z18_05590) Cj0683 993976..994413 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D3Z18_RS05595 (D3Z18_05595) priA 994395..996248 (+) 1854 WP_002924620.1 primosomal protein N' -
  D3Z18_RS05600 (D3Z18_05600) cipA 996258..997652 (-) 1395 WP_038401184.1 DUF2972 domain-containing protein -
  D3Z18_RS05605 (D3Z18_05605) ispG 997798..998871 (+) 1074 WP_002873329.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=314981 D3Z18_RS05590 WP_002852324.1 993976..994413(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain HPC5]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=314981 D3Z18_RS05590 WP_002852324.1 993976..994413(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAATAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment