Detailed information
Bioinformatically predicted
Overview
| Name | comO/pilO | Type | Machinery gene |
| Locus tag | E4T63_RS02085 | Genome accession | NZ_CP038438 |
| Coordinates | 461051..461674 (+) | Length | 207 a.a. |
| NCBI ID | WP_098966813.1 | Uniprot ID | A0A5C4L4I5 |
| Organism | Pseudomonas fluorescens strain LBUM677 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 456051..466674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4T63_RS02070 (E4T63_02070) | - | 456760..459207 (-) | 2448 | WP_096794690.1 | penicillin-binding protein 1A | - |
| E4T63_RS02075 (E4T63_02075) | pilM | 459424..460488 (+) | 1065 | WP_096794691.1 | pilus assembly protein PilM | Machinery gene |
| E4T63_RS02080 (E4T63_02080) | - | 460488..461054 (+) | 567 | WP_134785244.1 | PilN domain-containing protein | - |
| E4T63_RS02085 (E4T63_02085) | comO/pilO | 461051..461674 (+) | 624 | WP_098966813.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| E4T63_RS02090 (E4T63_02090) | pilP | 461671..462198 (+) | 528 | WP_098966815.1 | pilus assembly protein PilP | Machinery gene |
| E4T63_RS02095 (E4T63_02095) | pilQ | 462212..464290 (+) | 2079 | WP_135294791.1 | type IV pilus secretin PilQ | Machinery gene |
| E4T63_RS02100 (E4T63_02100) | aroK | 464295..464813 (+) | 519 | WP_027611316.1 | shikimate kinase AroK | - |
| E4T63_RS02105 (E4T63_02105) | aroB | 464965..466065 (+) | 1101 | WP_027611317.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23008.30 Da Isoelectric Point: 4.4488
>NTDB_id=314860 E4T63_RS02085 WP_098966813.1 461051..461674(+) (comO/pilO) [Pseudomonas fluorescens strain LBUM677]
MKPSEWLQSLRNIDFNDLDTSNIGSWPAAVKTIAGALLAVLVLALGYNFFISDMENQLEAKRQEEDTLKEQFASKAHMAA
NLELYTQQMKEMETSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQPFYIELPIQITVTGAYHDLATF
VSGVAGLPRIVTLHDFELAPANPDGGTKLRMSILAKTYRYNDKGLDK
MKPSEWLQSLRNIDFNDLDTSNIGSWPAAVKTIAGALLAVLVLALGYNFFISDMENQLEAKRQEEDTLKEQFASKAHMAA
NLELYTQQMKEMETSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQPFYIELPIQITVTGAYHDLATF
VSGVAGLPRIVTLHDFELAPANPDGGTKLRMSILAKTYRYNDKGLDK
Nucleotide
Download Length: 624 bp
>NTDB_id=314860 E4T63_RS02085 WP_098966813.1 461051..461674(+) (comO/pilO) [Pseudomonas fluorescens strain LBUM677]
ATGAAGCCGTCCGAATGGCTGCAAAGTCTGCGCAACATCGACTTCAACGATCTGGACACCAGCAATATCGGCTCCTGGCC
GGCCGCGGTGAAAACTATCGCGGGAGCATTGCTGGCGGTGCTGGTGTTGGCGCTTGGCTATAACTTTTTTATCAGCGACA
TGGAAAACCAGCTGGAAGCCAAGCGTCAGGAAGAGGACACCTTGAAGGAGCAGTTCGCCAGCAAGGCGCACATGGCTGCC
AACCTGGAGCTCTACACCCAGCAGATGAAGGAGATGGAGACCTCCTTCGGCGTGCTCTTGCGGCAGTTGCCCAGCGACAC
CGAGGTCCCGGGATTGCTCGAGGACATTACCCGTACCGGGCTGGGCAGCGGTCTTGAATTCGAAGAGATCAAGCTGCTGC
CGGAGGTGACCCAGCCGTTCTACATCGAGCTGCCGATCCAGATCACTGTCACCGGGGCTTACCACGACCTCGCGACCTTC
GTCAGTGGCGTCGCCGGGTTGCCACGGATCGTCACCTTGCACGATTTCGAACTGGCACCGGCCAATCCCGACGGCGGGAC
GAAGCTGCGCATGAGCATCCTCGCCAAGACCTACCGCTATAACGACAAGGGGTTGGACAAATGA
ATGAAGCCGTCCGAATGGCTGCAAAGTCTGCGCAACATCGACTTCAACGATCTGGACACCAGCAATATCGGCTCCTGGCC
GGCCGCGGTGAAAACTATCGCGGGAGCATTGCTGGCGGTGCTGGTGTTGGCGCTTGGCTATAACTTTTTTATCAGCGACA
TGGAAAACCAGCTGGAAGCCAAGCGTCAGGAAGAGGACACCTTGAAGGAGCAGTTCGCCAGCAAGGCGCACATGGCTGCC
AACCTGGAGCTCTACACCCAGCAGATGAAGGAGATGGAGACCTCCTTCGGCGTGCTCTTGCGGCAGTTGCCCAGCGACAC
CGAGGTCCCGGGATTGCTCGAGGACATTACCCGTACCGGGCTGGGCAGCGGTCTTGAATTCGAAGAGATCAAGCTGCTGC
CGGAGGTGACCCAGCCGTTCTACATCGAGCTGCCGATCCAGATCACTGTCACCGGGGCTTACCACGACCTCGCGACCTTC
GTCAGTGGCGTCGCCGGGTTGCCACGGATCGTCACCTTGCACGATTTCGAACTGGCACCGGCCAATCCCGACGGCGGGAC
GAAGCTGCGCATGAGCATCCTCGCCAAGACCTACCGCTATAACGACAAGGGGTTGGACAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comO/pilO | Acinetobacter baylyi ADP1 |
44.974 |
91.304 |
0.411 |
| pilO | Acinetobacter baumannii D1279779 |
44.737 |
91.787 |
0.411 |
| pilO | Legionella pneumophila strain ERS1305867 |
44.041 |
93.237 |
0.411 |