Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D2M30_RS08190 Genome accession   NZ_CP032146
Coordinates   1607851..1608750 (+) Length   299 a.a.
NCBI ID   WP_088612803.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1602851..1613750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08170 (D2M30_08185) - 1603540..1605243 (+) 1704 WP_125122601.1 glycosyl transferase -
  D2M30_RS08175 (D2M30_08190) - 1605240..1605521 (+) 282 WP_045506187.1 FlhB-like flagellar biosynthesis protein -
  D2M30_RS08180 (D2M30_08195) sucC 1605696..1606853 (+) 1158 WP_013352244.1 ADP-forming succinate--CoA ligase subunit beta -
  D2M30_RS08185 (D2M30_08200) sucD 1606882..1607784 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  D2M30_RS08190 (D2M30_08205) dprA 1607851..1608750 (+) 900 WP_088612803.1 DNA-processing protein DprA Machinery gene
  D2M30_RS08195 (D2M30_08210) topA 1608932..1611007 (+) 2076 WP_014470402.1 type I DNA topoisomerase -
  D2M30_RS08200 (D2M30_08215) trmFO 1611072..1612379 (+) 1308 WP_125122602.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D2M30_RS08205 (D2M30_08220) xerC 1612449..1613366 (+) 918 WP_013352249.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32915.15 Da        Isoelectric Point: 9.4258

>NTDB_id=314017 D2M30_RS08190 WP_088612803.1 1607851..1608750(+) (dprA) [Bacillus amyloliquefaciens strain YP6]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLREPHPLTVLSEGKTAPKAIFREIERKEPELDKVLSDYRREGITVI
PISSSRYPSWLKTIYDPPAVLFAKGHTSLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=314017 D2M30_RS08190 WP_088612803.1 1607851..1608750(+) (dprA) [Bacillus amyloliquefaciens strain YP6]
TTGGATCAAGCGTCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACGAGAGCCGCATCCATTAACTGTTTTGTCAGAAGGGAAAACAGCTCCGAAAGCAA
TTTTTCGAGAAATAGAGCGCAAGGAACCGGAACTTGATAAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATC
CCGATTTCATCAAGCCGCTACCCTTCATGGCTTAAAACAATTTATGATCCTCCGGCTGTCTTGTTTGCAAAAGGGCACAC
GTCACTTCTTGAAAAAGGCAGAAAAATAGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACGGCTGAACTCTCAAAAAAAGGCTGGGTCATAGTAAGCGGACTGGCATCTGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTAATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATATATGGCTGAACATCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTAGTTGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACGGCTTATCAAGCCCTTGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCGGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.572

100

0.716
  dprA Lactococcus lactis subsp. cremoris KW2

41.577

93.311

0.388
  dprA Legionella pneumophila strain ERS1305867

39.716

94.314

0.375

Multiple sequence alignment