Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CDG61_RS03385 Genome accession   NZ_CP032143
Coordinates   614755..615180 (+) Length   141 a.a.
NCBI ID   WP_087551340.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609755..620180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS03365 (CDG61_03365) bamB 610270..611418 (+) 1149 WP_087551344.1 outer membrane protein assembly factor BamB -
  CDG61_RS03370 (CDG61_03370) der 611589..613001 (+) 1413 WP_087551343.1 ribosome biogenesis GTPase Der -
  CDG61_RS03375 (CDG61_03375) - 613109..613882 (-) 774 WP_087551342.1 SDR family oxidoreductase -
  CDG61_RS03380 (CDG61_03380) mazG 613985..614752 (+) 768 WP_087551341.1 nucleoside triphosphate pyrophosphohydrolase -
  CDG61_RS03385 (CDG61_03385) comEA 614755..615180 (+) 426 WP_087551340.1 ComEA family DNA-binding protein Machinery gene
  CDG61_RS03390 (CDG61_03390) pcnB 615317..616771 (+) 1455 WP_087551339.1 polynucleotide adenylyltransferase PcnB -
  CDG61_RS03395 (CDG61_03395) folK 616768..617253 (+) 486 WP_087551338.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CDG61_RS03400 (CDG61_03400) panB 617297..618106 (+) 810 WP_087513054.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CDG61_RS03405 (CDG61_03405) panC 618109..618954 (+) 846 WP_087551337.1 pantoate--beta-alanine ligase -
  CDG61_RS03410 (CDG61_03410) rapZ 618982..619833 (+) 852 WP_087551336.1 RNase adapter RapZ -
  CDG61_RS03415 (CDG61_03415) - 619830..620099 (+) 270 WP_087551335.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15743.02 Da        Isoelectric Point: 10.2238

>NTDB_id=313861 CDG61_RS03385 WP_087551340.1 614755..615180(+) (comEA) [Acinetobacter sp. WCHAc010052]
MTIKAHTFYQFICIFLSAVLWSFQGVHAQQFDQQYLKWKAEQEAQDQKLKGNTADYYLSRPTVTTVGSSKKTAAAATGNK
VSLNSATLEQLQQLTGVGQKKAQAIIDYRQKNGKFKSVEELDQVKGIGPALMEKNRARLAL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=313861 CDG61_RS03385 WP_087551340.1 614755..615180(+) (comEA) [Acinetobacter sp. WCHAc010052]
ATGACAATCAAAGCCCATACATTTTATCAGTTTATCTGTATTTTTCTGTCCGCTGTACTGTGGAGTTTTCAGGGAGTGCA
TGCTCAGCAGTTTGATCAGCAGTATCTGAAATGGAAAGCTGAGCAGGAAGCACAGGATCAGAAATTAAAAGGCAATACCG
CAGACTATTATCTGTCCAGACCCACAGTTACAACTGTTGGAAGTTCAAAAAAAACGGCTGCAGCAGCAACAGGAAATAAA
GTCAGTCTGAACAGTGCCACACTGGAACAGCTTCAGCAGCTTACAGGTGTCGGGCAGAAAAAAGCTCAGGCAATCATTGA
TTACCGACAGAAAAATGGAAAATTTAAATCGGTGGAAGAGCTCGATCAGGTCAAGGGAATTGGTCCTGCGCTGATGGAGA
AAAACAGAGCCAGACTGGCTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(78-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

48.936

100

0.489
  comEA Acinetobacter baumannii strain A118

46.565

92.908

0.433
  comEA Acinetobacter baumannii D1279779

45.038

92.908

0.418

Multiple sequence alignment