Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D1345_RS12250 Genome accession   NZ_CP031968
Coordinates   2685882..2686673 (-) Length   263 a.a.
NCBI ID   WP_039753413.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain JP2-74     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2680882..2691673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1345_RS12235 (D1345_12235) - 2682834..2683172 (+) 339 WP_019100167.1 P-II family nitrogen regulator -
  D1345_RS12240 (D1345_12240) - 2683236..2683736 (-) 501 WP_157221982.1 hypothetical protein -
  D1345_RS12245 (D1345_12245) - 2684213..2685739 (-) 1527 WP_118267846.1 hypothetical protein -
  D1345_RS12250 (D1345_12250) comL 2685882..2686673 (-) 792 WP_039753413.1 outer membrane protein assembly factor BamD Machinery gene
  D1345_RS12255 (D1345_12255) rluD 2686672..2687775 (+) 1104 WP_118267849.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D1345_RS12260 (D1345_12260) pgeF 2687765..2688520 (+) 756 WP_043590486.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30346.44 Da        Isoelectric Point: 6.9811

>NTDB_id=312961 D1345_RS12250 WP_039753413.1 2685882..2686673(-) (comL) [Chromobacterium rhizoryzae strain JP2-74]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHYK
DNEPEQAIAAADRFIKLHPTHPNLDYLYYLKGLVFYNDDSGLLAKWAGQDMSERDPRAAREAFTAFRELVTRFPNSIYKE
DASKKMERLLDALGGNEMHVARYYMKRGAYLAAANRAQGVVKSYANTKYPEEALGIMVAAYDKLSMPQLRDDAKRVLALN
YPNSEYLKEGWSIEDMPWWKLWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=312961 D1345_RS12250 WP_039753413.1 2685882..2686673(-) (comL) [Chromobacterium rhizoryzae strain JP2-74]
ATGAAAAGATACGTTGTCGCTGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGATGAGACTCG
CGGCTGGACCGTGGAAAAGCTGTATTCGGAAGCGCATGATGAGTTGAACAGCGGCAATTATACCCGCGCTGTCAAGCTCT
ACGAAACGCTGGAAGCGCGTTTCCCTTACGGGCGTTACGCCCAGCAGGCGCAGATGGACCTGGCGTATACCCATTACAAG
GATAACGAGCCGGAGCAGGCCATCGCCGCCGCGGACCGTTTCATCAAGCTTCATCCCACCCATCCAAACCTGGACTACCT
CTATTATCTGAAAGGCTTGGTGTTTTACAACGATGATTCCGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCGAGC
GCGATCCGCGCGCCGCGCGCGAGGCCTTCACCGCCTTCCGCGAGCTGGTGACGCGCTTCCCCAACAGCATTTACAAGGAA
GACGCCTCCAAGAAGATGGAGCGGCTGCTGGATGCGCTGGGCGGCAACGAGATGCACGTGGCCCGCTATTACATGAAGCG
CGGCGCTTACCTGGCCGCGGCCAACCGCGCTCAGGGCGTGGTGAAGAGCTATGCCAACACCAAGTATCCGGAAGAGGCGC
TTGGCATCATGGTGGCGGCTTACGACAAGCTGTCCATGCCGCAACTGCGCGACGACGCCAAGCGCGTGCTGGCGCTGAAC
TACCCCAATAGCGAATACCTGAAAGAAGGCTGGTCCATTGAGGACATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.647

100

0.593
  comL Neisseria gonorrhoeae MS11

57.519

100

0.582

Multiple sequence alignment