Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D1819_RS00220 Genome accession   NZ_CP031961
Coordinates   39846..41084 (-) Length   412 a.a.
NCBI ID   WP_009838316.1    Uniprot ID   -
Organism   Pseudoalteromonas tunicata strain D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34846..46084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1819_RS00195 (D1819_00195) - 35097..36014 (+) 918 WP_009838311.1 histone deacetylase family protein -
  D1819_RS00200 (D1819_00200) yacG 36128..36367 (-) 240 WP_009838312.1 DNA gyrase inhibitor YacG -
  D1819_RS00205 (D1819_00205) pilB 36438..38120 (-) 1683 WP_009838313.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D1819_RS00210 (D1819_00210) coaE 38268..38885 (-) 618 WP_009838314.1 dephospho-CoA kinase -
  D1819_RS00215 (D1819_00215) pilD 38921..39826 (-) 906 WP_232284995.1 prepilin peptidase Machinery gene
  D1819_RS00220 (D1819_00220) pilC 39846..41084 (-) 1239 WP_009838316.1 type II secretion system F family protein Machinery gene
  D1819_RS00225 (D1819_00225) pilB 41181..42884 (-) 1704 WP_009838317.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D1819_RS22035 - 43235..43340 (-) 106 Protein_46 pilin -
  D1819_RS00235 (D1819_00235) nadC 43886..44776 (-) 891 WP_009838319.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D1819_RS00240 (D1819_00240) ampD 45069..45614 (+) 546 WP_009838320.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44473.10 Da        Isoelectric Point: 9.5878

>NTDB_id=312879 D1819_RS00220 WP_009838316.1 39846..41084(-) (pilC) [Pseudoalteromonas tunicata strain D2]
MAKKSTATKALDTYTWVGVNSRGKKLEGEMNGQSIALVKAQLRKQNITPSKVKKKSKSLLGLSSEPKITAKDICVLTRQI
ATMLMAGVPLIQAIDMIGSGSEKKSLQRLITKIADEVKAGNPFSDALRKHPILFDDLYCDLVASGEQSGALDNIFDRVAT
YKEKSEALKSKIKKAMIYPIAVLSIAFVVTTILLIFVVPQFQSVFAGFGAELPAFTLFVIGISEFMQNYWWLVFGGMAAG
FYAFRQAHRASKNVRDNTDRTILKLPILGKILDKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRNAIIEIKSE
VSSGNQMNFAMRNSNIFPDMVIQMVAIGEESGALDDMLAKVATIYEQEVDDAVDGLSTLLEPLIMAILGVLVGGLIVAMY
LPIFQLGAIVGG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=312879 D1819_RS00220 WP_009838316.1 39846..41084(-) (pilC) [Pseudoalteromonas tunicata strain D2]
ATGGCAAAAAAATCAACGGCCACCAAAGCGCTTGATACTTATACTTGGGTAGGTGTGAATAGCCGCGGTAAAAAGCTTGA
AGGCGAAATGAATGGCCAAAGTATTGCACTGGTTAAAGCGCAGCTGCGCAAACAAAACATCACGCCATCAAAAGTAAAAA
AGAAATCCAAATCACTACTTGGGCTTTCATCAGAACCTAAAATTACCGCCAAAGATATTTGTGTGCTAACCCGTCAAATA
GCCACCATGTTAATGGCAGGTGTACCGCTAATTCAAGCAATTGACATGATTGGCTCAGGTTCAGAGAAAAAAAGCCTTCA
ACGCTTAATTACCAAGATAGCAGACGAAGTAAAAGCGGGTAATCCGTTTTCTGATGCCTTGCGTAAACACCCAATATTAT
TTGATGACTTGTATTGCGATTTAGTGGCATCAGGCGAGCAATCTGGTGCATTAGATAATATATTTGACCGTGTTGCCACC
TACAAAGAAAAGTCGGAAGCGCTGAAATCTAAAATCAAAAAAGCCATGATATACCCGATTGCAGTGCTGAGTATTGCCTT
TGTGGTTACCACTATTCTGCTAATTTTTGTTGTCCCTCAATTTCAAAGTGTTTTTGCTGGTTTTGGCGCTGAACTCCCCG
CATTTACATTATTTGTAATTGGTATTTCTGAATTTATGCAAAATTATTGGTGGCTTGTTTTTGGGGGCATGGCAGCTGGT
TTTTATGCCTTTAGGCAAGCACATCGTGCTAGCAAAAATGTGCGGGATAATACCGACCGCACCATTTTAAAACTGCCTAT
TCTTGGCAAAATTTTAGATAAAGCAGCGGTTGCCCGCTACGCCCGCACTTTATCAACCACCTTTGCCGCTGGCGTACCAC
TTGTAGATGCCCTTGACTCTGCCGCCGGCGCTTCAGGCAATGCGGTTTATCGCAACGCTATAATAGAAATTAAATCCGAA
GTGAGTTCAGGTAATCAAATGAACTTTGCTATGCGAAATTCTAATATTTTTCCTGACATGGTGATTCAAATGGTGGCCAT
TGGTGAAGAATCGGGCGCCCTTGATGATATGCTGGCAAAAGTAGCCACTATTTACGAGCAAGAAGTCGACGATGCCGTTG
ATGGTTTATCAACCTTATTAGAGCCTTTAATAATGGCTATTTTAGGGGTTTTAGTGGGTGGTTTGATTGTCGCCATGTAC
TTACCAATCTTTCAACTTGGCGCTATTGTTGGTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.72

96.359

0.604
  pilC Legionella pneumophila strain ERS1305867

55

97.087

0.534
  pilC Acinetobacter baumannii D1279779

54.5

97.087

0.529
  pilC Acinetobacter baylyi ADP1

53.35

97.816

0.522
  pilC Vibrio cholerae strain A1552

47.304

99.029

0.468
  pilC Vibrio campbellii strain DS40M4

45.098

99.029

0.447
  pilG Neisseria meningitidis 44/76-A

42.462

96.602

0.41
  pilG Neisseria gonorrhoeae MS11

42.211

96.602

0.408

Multiple sequence alignment