Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   CH578_RS01855 Genome accession   NZ_CP031690
Coordinates   373807..374103 (+) Length   98 a.a.
NCBI ID   WP_061671753.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P617-9224     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368807..379103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH578_RS01845 (CH578_01845) - 370326..373363 (+) 3038 Protein_343 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  CH578_RS01850 (CH578_01850) - 373632..373814 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  CH578_RS01855 (CH578_01855) HI0659 373807..374103 (+) 297 WP_061671753.1 helix-turn-helix domain-containing protein Machinery gene
  CH578_RS01860 (CH578_01860) - 374287..376203 (+) 1917 WP_070828340.1 ABC transporter ATP-binding protein -
  CH578_RS01865 (CH578_01865) - 376213..376749 (+) 537 WP_011272152.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  CH578_RS01870 (CH578_01870) - 376765..377316 (+) 552 WP_070828341.1 Sua5/YciO/YrdC/YwlC family protein -
  CH578_RS01875 (CH578_01875) aroE 377320..378126 (+) 807 WP_011272150.1 shikimate dehydrogenase -
  CH578_RS01880 (CH578_01880) - 378138..378890 (+) 753 WP_011272149.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11106.97 Da        Isoelectric Point: 10.3139

>NTDB_id=310187 CH578_RS01855 WP_061671753.1 373807..374103(+) (HI0659) [Haemophilus influenzae strain P617-9224]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRIKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=310187 CH578_RS01855 WP_061671753.1 373807..374103(+) (HI0659) [Haemophilus influenzae strain P617-9224]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTATTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGATAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

98.98

100

0.99

Multiple sequence alignment