Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | CH628_RS03445 | Genome accession | NZ_CP031681 |
| Coordinates | 659629..660135 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain P669-6977 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 654629..665135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH628_RS03425 (CH628_03425) | - | 654722..655051 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CH628_RS03430 (CH628_03430) | - | 655220..656065 (-) | 846 | WP_011272052.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| CH628_RS03435 (CH628_03435) | - | 656138..658732 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| CH628_RS03440 (CH628_03440) | comA | 658831..659628 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH628_RS03445 (CH628_03445) | comB | 659629..660135 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH628_RS03450 (CH628_03450) | comC | 660132..660653 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| CH628_RS03455 (CH628_03455) | comD | 660650..661063 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| CH628_RS03460 (CH628_03460) | comE | 661073..662410 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH628_RS03465 (CH628_03465) | - | 662423..663109 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH628_RS03470 (CH628_03470) | nfuA | 663185..663781 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH628_RS03475 (CH628_03475) | nudC | 663848..664642 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=309879 CH628_RS03445 WP_011272049.1 659629..660135(+) (comB) [Haemophilus influenzae strain P669-6977]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=309879 CH628_RS03445 WP_011272049.1 659629..660135(+) (comB) [Haemophilus influenzae strain P669-6977]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |