Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   CH639_RS01900 Genome accession   NZ_CP031678
Coordinates   378473..378769 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain P679-2791     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 373473..383769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH639_RS01875 (CH639_01875) - 374185..374349 (-) 165 WP_032823763.1 hypothetical protein -
  CH639_RS09515 - 374477..374566 (-) 90 Protein_349 ABC transporter -
  CH639_RS09520 - 374692..374781 (-) 90 Protein_350 ABC transporter -
  CH639_RS01890 (CH639_01890) - 375097..378152 (+) 3056 Protein_351 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  CH639_RS01895 (CH639_01895) - 378259..378480 (+) 222 WP_005658624.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CH639_RS01900 (CH639_01900) HI0659 378473..378769 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  CH639_RS01905 (CH639_01905) - 378936..380852 (+) 1917 WP_116956868.1 ABC transporter ATP-binding protein -
  CH639_RS01910 (CH639_01910) - 380862..381410 (+) 549 WP_050829194.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  CH639_RS01915 (CH639_01915) - 381426..381977 (+) 552 WP_084999963.1 Sua5/YciO/YrdC/YwlC family protein -
  CH639_RS01920 (CH639_01920) aroE 381981..382787 (+) 807 WP_011272150.1 shikimate dehydrogenase -
  CH639_RS01925 (CH639_01925) - 382799..383551 (+) 753 WP_011272149.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=309770 CH639_RS01900 WP_005650837.1 378473..378769(+) (HI0659) [Haemophilus influenzae strain P679-2791]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=309770 CH639_RS01900 WP_005650837.1 378473..378769(+) (HI0659) [Haemophilus influenzae strain P679-2791]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTATTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment