Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   E3U39_RS08990 Genome accession   NZ_CP038028
Coordinates   1822055..1822345 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817055..1827345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS08975 (E3U39_08975) - 1817276..1818601 (-) 1326 WP_108702423.1 G5 and 3D domain-containing protein -
  E3U39_RS08980 (E3U39_08980) - 1818736..1819503 (-) 768 WP_053573817.1 TatD family hydrolase -
  E3U39_RS08985 (E3U39_08985) metG 1819580..1821571 (-) 1992 WP_053573816.1 methionine--tRNA ligase -
  E3U39_RS08990 (E3U39_08990) abrB 1822055..1822345 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  E3U39_RS08995 (E3U39_08995) rsmI 1822395..1823276 (-) 882 WP_053573815.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  E3U39_RS09000 (E3U39_09000) - 1823251..1823550 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  E3U39_RS09005 (E3U39_09005) - 1823537..1824280 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  E3U39_RS09010 (E3U39_09010) yabA 1824341..1824700 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  E3U39_RS09015 (E3U39_09015) yaaT 1824715..1825542 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  E3U39_RS09020 (E3U39_09020) holB 1825545..1826534 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  E3U39_RS09025 (E3U39_09025) - 1826546..1826986 (-) 441 WP_004264730.1 DUF327 family protein -
  E3U39_RS09030 (E3U39_09030) darA 1826999..1827328 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=309441 E3U39_RS08990 WP_169510469.1 1822055..1822345(+) (abrB) [Bacillus amyloliquefaciens strain FS1092]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=309441 E3U39_RS08990 WP_169510469.1 1822055..1822345(+) (abrB) [Bacillus amyloliquefaciens strain FS1092]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979