Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CKAES1R_RS23805 Genome accession   NZ_CP037926
Coordinates   4945552..4946994 (-) Length   480 a.a.
NCBI ID   WP_054377992.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AES1R     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4940552..4951994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKAES1R_RS23775 (CKAES1R_04679) - 4940878..4941993 (+) 1116 WP_019682856.1 glycosyltransferase family 1 protein -
  CKAES1R_RS23780 (CKAES1R_04680) - 4941986..4942747 (+) 762 WP_054377991.1 DUF2334 domain-containing protein -
  CKAES1R_RS23785 (CKAES1R_04681) - 4942744..4943745 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  CKAES1R_RS23790 (CKAES1R_04682) - 4943720..4943932 (-) 213 WP_003101176.1 hypothetical protein -
  CKAES1R_RS23795 (CKAES1R_04683) purU 4943982..4944833 (-) 852 WP_019682321.1 formyltetrahydrofolate deformylase -
  CKAES1R_RS23800 (CKAES1R_04684) mvaT 4945093..4945467 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  CKAES1R_RS23805 (CKAES1R_04685) sbcB 4945552..4946994 (-) 1443 WP_054377992.1 exodeoxyribonuclease I Machinery gene
  CKAES1R_RS23810 (CKAES1R_04686) - 4947219..4947956 (+) 738 WP_019681895.1 hypothetical protein -
  CKAES1R_RS23815 (CKAES1R_04687) - 4947994..4948791 (+) 798 WP_019681896.1 RDD family protein -
  CKAES1R_RS23820 (CKAES1R_04688) - 4948788..4949768 (+) 981 WP_003134640.1 stage II sporulation protein M -
  CKAES1R_RS23825 (CKAES1R_04689) - 4949755..4951326 (+) 1572 WP_019681897.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55467.72 Da        Isoelectric Point: 5.5542

>NTDB_id=308887 CKAES1R_RS23805 WP_054377992.1 4945552..4946994(-) (sbcB) [Pseudomonas aeruginosa strain AES1R]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQSATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRGEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=308887 CKAES1R_RS23805 WP_054377992.1 4945552..4946994(-) (sbcB) [Pseudomonas aeruginosa strain AES1R]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGTCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGTAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGGCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.176

88.542

0.435

Multiple sequence alignment