Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E1J56_RS08605 Genome accession   NZ_CP037910
Coordinates   1810619..1812046 (-) Length   475 a.a.
NCBI ID   WP_077778279.1    Uniprot ID   -
Organism   Escherichia coli strain YSP8-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805619..1817046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J56_RS08575 yeeZ 1805674..1806498 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E1J56_RS08580 yeeY 1806544..1807473 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  E1J56_RS08585 yoeI 1807688..1807750 (+) 63 WP_010723108.1 membrane protein YoeI -
  E1J56_RS08590 plaP 1807740..1809098 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E1J56_RS08595 tsuA 1809277..1810335 (+) 1059 WP_024241668.1 thiosulfate utilization transporter TsuA/YeeE -
  E1J56_RS08600 tsuB 1810349..1810576 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E1J56_RS08605 sbcB 1810619..1812046 (-) 1428 WP_077778279.1 exodeoxyribonuclease I Machinery gene
  E1J56_RS08610 dacD 1812255..1813421 (+) 1167 WP_136655405.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E1J56_RS08615 sbmC 1813540..1814013 (+) 474 WP_044720530.1 DNA gyrase inhibitor SbmC -
  E1J56_RS08620 yeeA 1814212..1815270 (+) 1059 WP_001200890.1 FUSC family protein -
  E1J56_RS08625 tmaR 1815442..1815771 (+) 330 WP_000450409.1 DUF496 family protein -
  E1J56_RS08630 - 1815872..1816168 (-) 297 Protein_1697 EutP/PduV family microcompartment system protein -
  E1J56_RS08635 - 1816171..1816506 (+) 336 WP_136655406.1 cobalamin biosynthesis protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54417.68 Da        Isoelectric Point: 5.3458

>NTDB_id=308675 E1J56_RS08605 WP_077778279.1 1810619..1812046(-) (sbcB) [Escherichia coli strain YSP8-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTSQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=308675 E1J56_RS08605 WP_077778279.1 1810619..1812046(-) (sbcB) [Escherichia coli strain YSP8-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTTGATGTTATGCGTGCCTGTTATGCGCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCTAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGAGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment