Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E1J55_RS08815 Genome accession   NZ_CP037903
Coordinates   1856288..1857715 (-) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain LHM10-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1851288..1862715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS08785 yeeZ 1851343..1852167 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E1J55_RS08790 yeeY 1852213..1853142 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  E1J55_RS08795 yoeI 1853357..1853419 (+) 63 WP_010723108.1 membrane protein YoeI -
  E1J55_RS08800 plaP 1853409..1854767 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E1J55_RS08805 tsuA 1854946..1856004 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  E1J55_RS08810 tsuB 1856018..1856245 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E1J55_RS08815 sbcB 1856288..1857715 (-) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  E1J55_RS08820 dacD 1857924..1859090 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E1J55_RS08825 sbmC 1859209..1859682 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  E1J55_RS08830 yeeA 1859880..1860938 (+) 1059 WP_001200905.1 FUSC family protein -
  E1J55_RS08835 tmaR 1861110..1861439 (+) 330 WP_000450409.1 DUF496 family protein -
  E1J55_RS08840 - 1861540..1861722 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  E1J55_RS08845 - 1861776..1861865 (+) 90 Protein_1732 transposase domain-containing protein -
  E1J55_RS08850 - 1862211..1862291 (-) 81 Protein_1733 hypothetical protein -
  E1J55_RS08855 yeeW 1862337..1862531 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=308595 E1J55_RS08815 WP_000980568.1 1856288..1857715(-) (sbcB) [Escherichia coli strain LHM10-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=308595 E1J55_RS08815 WP_000980568.1 1856288..1857715(-) (sbcB) [Escherichia coli strain LHM10-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCACAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment