Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NT05HA_RS06125 Genome accession   NC_012913
Coordinates   1352905..1353648 (-) Length   247 a.a.
NCBI ID   WP_032996284.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347905..1358648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT05HA_RS06105 (NT05HA_1333) rimI 1348075..1348518 (+) 444 WP_005701123.1 ribosomal protein S18-alanine N-acetyltransferase -
  NT05HA_RS06110 (NT05HA_1334) recC 1348521..1351898 (-) 3378 WP_012771679.1 exodeoxyribonuclease V subunit gamma -
  NT05HA_RS06115 (NT05HA_1335) comQ 1351936..1352238 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  NT05HA_RS06120 (NT05HA_1336) comP 1352222..1352908 (-) 687 WP_005701126.1 DUF2572 family protein Machinery gene
  NT05HA_RS06125 (NT05HA_1337) comO 1352905..1353648 (-) 744 WP_032996284.1 PulJ/GspJ family protein Machinery gene
  NT05HA_RS06130 (NT05HA_1338) comN 1353635..1354156 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NT05HA_RS06150 (NT05HA_1342) pal 1354902..1355366 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  NT05HA_RS06155 (NT05HA_1343) tolB 1355381..1356625 (-) 1245 WP_390882880.1 Tol-Pal system beta propeller repeat protein TolB -
  NT05HA_RS06160 (NT05HA_1344) tolA 1356697..1357948 (-) 1252 Protein_1205 cell envelope integrity protein TolA -
  NT05HA_RS06165 (NT05HA_1346) tolR 1357967..1358389 (-) 423 WP_005701133.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28217.38 Da        Isoelectric Point: 8.4592

>NTDB_id=30827 NT05HA_RS06125 WP_032996284.1 1352905..1353648(-) (comO) [Aggregatibacter aphrophilus NJ8700]
MMKNRIRLKQKYHSGQSLVSLMLSVSLSSFLLLVILQFYSQHQQQNQEILLRLQLQTELQRVVQLMGKDLARSGFRAVSD
KLTKDNLSLFEQPNQPSAITIAQMNAEKNNSCVVFFYDLDANGCVGGQYKGDTCLANGRNATKEIERELFGYRLNKKMLE
TRLTYKSAVKQNCSLEDCQRYTQQSACNHGGWVDLLDEKEYEISHLTFDWVAEQKGIEVRLIGNLKQNKKISYETAIVVP
LLNGEVP

Nucleotide


Download         Length: 744 bp        

>NTDB_id=30827 NT05HA_RS06125 WP_032996284.1 1352905..1353648(-) (comO) [Aggregatibacter aphrophilus NJ8700]
ATGATGAAGAATAGAATTAGGTTAAAACAAAAATACCATTCAGGACAAAGTTTGGTGAGCTTAATGCTTTCGGTGTCGCT
TTCTTCGTTTTTACTCTTGGTAATTTTGCAGTTTTATAGTCAACATCAGCAACAGAATCAGGAGATTCTTTTACGTTTGC
AGTTACAAACGGAGTTACAACGCGTTGTTCAGCTTATGGGAAAAGATTTGGCGCGTAGCGGTTTTCGGGCAGTGAGCGAC
AAGTTAACAAAAGATAACTTATCCTTATTTGAACAACCAAATCAGCCCTCAGCAATCACTATTGCTCAAATGAATGCAGA
GAAAAACAACAGTTGTGTTGTATTTTTTTATGATCTTGATGCTAACGGTTGTGTGGGAGGGCAATATAAAGGCGATACTT
GTCTGGCGAATGGGCGAAATGCAACCAAAGAAATTGAACGCGAATTATTCGGTTATCGGCTCAATAAAAAAATGCTGGAA
ACCCGTTTAACGTATAAAAGTGCGGTGAAACAAAATTGCAGTTTAGAAGATTGTCAACGATATACCCAACAATCTGCCTG
TAATCACGGTGGTTGGGTCGATTTGTTAGATGAAAAAGAATATGAAATCTCTCATTTAACCTTTGATTGGGTGGCAGAAC
AAAAAGGCATTGAAGTGCGTTTAATTGGGAATTTAAAGCAGAATAAAAAAATTTCCTACGAAACCGCCATCGTTGTGCCG
TTATTAAACGGGGAAGTGCCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

55.238

85.02

0.47

Multiple sequence alignment