Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   AB849_RS08350 Genome accession   NZ_CP036487
Coordinates   1618478..1620838 (-) Length   786 a.a.
NCBI ID   WP_049720390.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613478..1625838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS08335 (AB849_008335) - 1614203..1615381 (+) 1179 WP_082240550.1 NRAMP family divalent metal transporter -
  AB849_RS08340 (AB849_008340) purU 1615411..1616298 (-) 888 WP_037993241.1 formyltetrahydrofolate deformylase -
  AB849_RS08345 (AB849_008345) - 1616611..1618446 (+) 1836 WP_037993240.1 monovalent cation:proton antiporter family protein -
  AB849_RS08350 (AB849_008350) helD 1618478..1620838 (-) 2361 WP_049720390.1 RNA polymerase recycling motor HelD Machinery gene
  AB849_RS08355 (AB849_008355) - 1621137..1622129 (+) 993 WP_037994678.1 LacI family DNA-binding transcriptional regulator -
  AB849_RS08360 (AB849_008360) rbsK 1622117..1623001 (+) 885 WP_049720389.1 ribokinase -
  AB849_RS08365 (AB849_008365) rbsD 1622998..1623390 (+) 393 WP_049720388.1 D-ribose pyranase -
  AB849_RS08370 (AB849_008370) - 1623407..1624906 (+) 1500 WP_049720387.1 sugar ABC transporter ATP-binding protein -
  AB849_RS08375 (AB849_008375) - 1624890..1625834 (+) 945 WP_049720386.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 91026.90 Da        Isoelectric Point: 6.7684

>NTDB_id=307913 AB849_RS08350 WP_049720390.1 1618478..1620838(-) (helD) [Thermoactinomyces vulgaris strain CDF]
MENSKRIWQEEQERVDRVIDEIDGRLSSLEQQANQVKSDIVDIRKNFWEDVRINFADEIETTETVVSIKQQAEVLAERER
RHRTAQKQVQLLKKMKSSPYFGRIDFTEHGEEKESIYLGIASLVDEQTNEFLIYDWRAPVCSLYYDYPPGPARYETPGGT
VEGFIGLKRQFLIKNGIIESLFDTGITIGDQLLQEVLGKRSDSQMKSIVATIQQEQNRIIRNEKSRLVIVQGAAGSGKTS
AALQRVAYLLYRYRNSLKAENILLFSPNPMFNRYVSTVLPELGEENMQQTTFQELLEHQLKNLLKVENPFSQIEYTLTNH
QEDGYEARIDGIRYKASRAYIRLLDLYLSYLGQHGALVFRDIPFRGGTIIPAGEIKAHFASLDSSLPLTHRISLVKDRLM
AELKKRAREEVKKDWVDEEIQWLNPADYIRADQALQKDKHFTSDTFDDLQRERHWLAKKVVQKHIKPAVRMVKKLGFLDI
PAIYRQLFADPTLAKDALGVTDLPETWPDICRQTVAKLEQKELFYEDATPLLYLKTRLEGLETNRSIRHIFIDEAQDYSP
FQFFFLKRLFPRSKMTILGDFNQAVFSHTPVHHNMAELSSLYGKEQTELVELKRSYRSTFPIIEFTRHLAENKEAIEPFE
RPGSKPTVTEVQNRKELHNRILHRIETLLKDGHETIAVICKTAAESQKVFDALNKATAEPVQLITKESVEFHPGILVIPV
YLAKGIEFDAVILYDASGDQYHRENERKLLYTACTRAMHALHLYCLGKMSPFIKEVPEDTYLRDHQ

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=307913 AB849_RS08350 WP_049720390.1 1618478..1620838(-) (helD) [Thermoactinomyces vulgaris strain CDF]
ATGGAAAATTCCAAACGGATCTGGCAGGAAGAGCAAGAACGTGTCGACCGGGTGATCGATGAAATCGACGGACGCCTTTC
TTCGCTCGAACAGCAAGCAAACCAAGTCAAATCAGACATTGTGGATATACGCAAAAACTTTTGGGAAGATGTGCGGATCA
ATTTTGCCGACGAGATCGAAACAACCGAAACCGTGGTCAGCATCAAGCAACAAGCCGAAGTTTTGGCGGAAAGAGAGCGC
CGCCACCGAACCGCGCAAAAACAAGTGCAACTCTTAAAGAAAATGAAATCCTCCCCCTACTTCGGACGGATTGATTTTAC
CGAACACGGGGAAGAAAAAGAATCGATTTATCTGGGAATCGCCTCGCTGGTCGATGAGCAAACGAATGAGTTTCTCATTT
ATGACTGGCGCGCCCCCGTCTGCAGCCTGTATTATGATTACCCGCCGGGGCCTGCACGGTATGAAACGCCGGGCGGAACG
GTCGAAGGATTCATCGGTCTGAAGCGCCAATTCCTGATAAAAAACGGAATCATTGAAAGCTTGTTTGACACCGGGATCAC
CATTGGCGATCAACTGTTGCAGGAAGTGCTCGGAAAAAGATCCGACTCCCAAATGAAAAGCATCGTGGCCACCATTCAAC
AAGAACAAAACCGCATCATCCGTAATGAAAAAAGCCGGCTGGTCATCGTTCAAGGGGCGGCCGGGAGCGGAAAAACTTCG
GCCGCGTTGCAACGGGTCGCCTATCTCCTTTACCGGTACCGGAATTCATTGAAAGCCGAAAATATCCTTTTGTTTTCCCC
CAATCCGATGTTTAACCGGTATGTCTCCACGGTTCTTCCCGAACTGGGGGAGGAAAACATGCAACAAACCACTTTTCAGG
AGCTGTTGGAACATCAATTGAAAAATCTATTGAAAGTGGAAAATCCGTTTTCACAAATTGAATATACCTTGACGAACCAT
CAGGAAGACGGGTATGAGGCAAGGATTGACGGCATCCGCTACAAAGCCTCCCGGGCATACATCCGGTTGCTGGACCTTTA
CCTGTCTTATCTCGGGCAACATGGCGCGTTAGTCTTCCGGGACATTCCGTTCCGTGGCGGCACGATCATTCCGGCCGGGG
AAATCAAAGCCCATTTTGCTTCCCTGGATTCGTCCCTTCCGCTCACCCACCGGATCTCCCTGGTCAAAGACCGGCTGATG
GCAGAACTGAAAAAGCGGGCCCGGGAAGAAGTCAAAAAAGACTGGGTGGATGAAGAAATCCAGTGGTTGAATCCGGCCGA
TTACATCCGCGCTGACCAAGCGCTGCAAAAAGACAAACATTTCACTTCCGATACCTTTGACGATCTACAAAGGGAACGGC
ACTGGCTGGCCAAAAAAGTGGTCCAAAAACACATCAAACCGGCTGTCCGCATGGTCAAAAAACTCGGATTTCTGGACATT
CCGGCCATCTACCGGCAACTGTTTGCCGATCCAACCCTGGCCAAAGATGCCCTCGGGGTCACGGATCTGCCGGAAACCTG
GCCGGACATCTGCCGGCAAACGGTTGCCAAACTGGAGCAAAAGGAGCTTTTTTACGAAGACGCCACTCCTTTGCTCTATT
TGAAAACCCGGCTTGAAGGATTGGAAACCAACCGGTCCATCCGCCATATTTTTATCGATGAAGCGCAGGATTACTCGCCT
TTTCAGTTTTTCTTTTTAAAGCGTTTGTTTCCGCGCAGCAAGATGACAATCCTCGGCGATTTCAACCAGGCCGTCTTTTC
TCATACCCCGGTTCATCACAATATGGCTGAGTTGTCCTCTCTGTATGGAAAAGAGCAAACCGAATTGGTTGAATTGAAAC
GAAGTTACCGGTCCACCTTTCCGATCATCGAATTCACCCGTCACCTGGCGGAAAACAAAGAAGCCATCGAGCCCTTTGAA
CGTCCGGGGAGCAAGCCGACCGTGACCGAAGTGCAAAACCGAAAGGAACTTCACAACCGGATTCTCCACCGCATCGAAAC
ATTGCTAAAAGACGGGCATGAAACGATTGCCGTCATATGCAAAACAGCCGCGGAAAGCCAAAAGGTTTTTGATGCATTGA
ACAAAGCAACTGCCGAACCGGTTCAACTGATCACGAAAGAATCCGTCGAATTTCACCCGGGCATCCTGGTCATTCCGGTT
TATCTCGCCAAAGGCATTGAATTTGATGCCGTGATTCTTTATGACGCTTCCGGGGATCAATATCACCGGGAAAACGAGCG
GAAATTATTGTACACCGCCTGCACCCGCGCCATGCATGCTTTGCACCTTTACTGCCTCGGCAAAATGAGTCCGTTTATAA
AAGAAGTCCCTGAAGACACCTATCTCCGGGATCATCAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(216-587)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(715-764)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

48.21

99.491

0.48