Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DYY63_RS05200 Genome accession   NZ_CP031553
Coordinates   1089640..1090338 (-) Length   232 a.a.
NCBI ID   WP_025248535.1    Uniprot ID   -
Organism   Pasteurella multocida strain EB168     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1084640..1095338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY63_RS05185 (DYY63_05185) - 1084920..1085762 (+) 843 WP_015702556.1 divergent polysaccharide deacetylase family protein -
  DYY63_RS05190 (DYY63_05190) - 1085783..1086469 (+) 687 WP_005757690.1 hypothetical protein -
  DYY63_RS05195 (DYY63_05195) - 1086576..1089137 (-) 2562 WP_025248534.1 TonB-dependent receptor -
  DYY63_RS05200 (DYY63_05200) comM 1089640..1090338 (-) 699 WP_025248535.1 ATP-binding protein Machinery gene
  DYY63_RS05205 (DYY63_05205) - 1090473..1091135 (+) 663 WP_012478341.1 heteromeric transposase endonuclease subunit TnsA -
  DYY63_RS05210 (DYY63_05210) - 1091125..1093052 (+) 1928 Protein_1014 Mu transposase C-terminal domain-containing protein -
  DYY63_RS05215 (DYY63_05215) - 1093052..1093938 (+) 887 Protein_1015 TniB family NTP-binding protein -
  DYY63_RS05220 (DYY63_05220) - 1093935..1095014 (+) 1080 WP_240322135.1 TniQ family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26067.05 Da        Isoelectric Point: 9.3676

>NTDB_id=307524 DYY63_RS05200 WP_025248535.1 1089640..1090338(-) (comM) [Pasteurella multocida strain EB168]
MTFISSFYSGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHY
QGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQQTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKE
IERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLNNECQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=307524 DYY63_RS05200 WP_025248535.1 1089640..1090338(-) (comM) [Pasteurella multocida strain EB168]
ATGACATTTATTTCTAGTTTTTACAGCGGCACCATACCCAAACCCGGTGAAATTTCGCTCGCACACAATGGGGTGTTATT
TCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGTCAACCTTTGGAAAGTGGTGAAATTATCATTT
CGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGCCGCCATGAATCCTAGCCCAACGGGACATTAT
CAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCAATCGCTTATCCGGTCCGTTTTTAGATCGCTT
TGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAGCAAACAGATCGGGGCGAAAGTAGCGCACAAG
TGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGGGAAAATTAATGCTTATTTGACCAGTAAAGAA
ATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAAATGCCTTAGCTAAATTGGGGTTATCCGTACG
CGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAATAATGAATGCCAAATTCAACAATGCCACCTCG
CCGAAGCACTGGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATCTGCAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

87.387

95.69

0.836
  comM Glaesserella parasuis strain SC1401

81.223

98.707

0.802
  comM Vibrio cholerae strain A1552

69.507

96.121

0.668
  comM Vibrio campbellii strain DS40M4

67.713

96.121

0.651
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

52.193

98.276

0.513
  comM Legionella pneumophila str. Paris

51.402

92.241

0.474
  comM Legionella pneumophila strain ERS1305867

51.402

92.241

0.474

Multiple sequence alignment