Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV947_RS03620 Genome accession   NZ_CP031545
Coordinates   674558..674851 (+) Length   97 a.a.
NCBI ID   WP_014621407.1    Uniprot ID   A0AAU9H9S0
Organism   Streptococcus thermophilus strain ST109     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 669558..679851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV947_RS03600 (DV947_03600) - 669886..670881 (+) 996 WP_046206426.1 SIR2 family protein -
  DV947_RS03605 (DV947_03605) - 670887..672743 (+) 1857 WP_116920185.1 ATP-binding protein -
  DV947_RS03610 (DV947_03610) - 672852..674036 (+) 1185 WP_224103284.1 restriction endonuclease subunit S -
  DV947_RS03615 (DV947_03615) - 674250..674568 (+) 319 Protein_649 type II toxin-antitoxin system RelE/ParE family toxin -
  DV947_RS03620 (DV947_03620) HI0659 674558..674851 (+) 294 WP_014621407.1 helix-turn-helix transcriptional regulator Machinery gene
  DV947_RS03625 (DV947_03625) - 674873..676474 (+) 1602 WP_014621408.1 type I restriction-modification system subunit M -
  DV947_RS03630 (DV947_03630) - 676582..676968 (+) 387 Protein_652 PD-(D/E)XK nuclease family transposase -
  DV947_RS10455 (DV947_03635) - 677069..678068 (+) 1000 Protein_653 DNA/RNA non-specific endonuclease -
  DV947_RS03640 (DV947_03640) - 678219..678779 (+) 561 WP_011225762.1 LemA family protein -
  DV947_RS03645 (DV947_03645) htpX 678781..679680 (+) 900 WP_011227064.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.50 Da        Isoelectric Point: 5.8962

>NTDB_id=307413 DV947_RS03620 WP_014621407.1 674558..674851(+) (HI0659) [Streptococcus thermophilus strain ST109]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=307413 DV947_RS03620 WP_014621407.1 674558..674851(+) (HI0659) [Streptococcus thermophilus strain ST109]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment