Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BRN32_RS06010 Genome accession   NZ_CP031461
Coordinates   1156294..1157352 (+) Length   352 a.a.
NCBI ID   WP_069964966.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain OS198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151294..1162352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRN32_RS06000 (BRN32_06000) - 1152689..1153339 (-) 651 WP_011407794.1 hypothetical protein -
  BRN32_RS06005 (BRN32_06005) - 1153649..1156078 (-) 2430 WP_011257992.1 penicillin-binding protein 1A -
  BRN32_RS06010 (BRN32_06010) comM 1156294..1157352 (+) 1059 WP_069964966.1 pilus assembly protein PilM Machinery gene
  BRN32_RS06015 (BRN32_06015) - 1157352..1158110 (+) 759 WP_044757059.1 PilN domain-containing protein -
  BRN32_RS06020 (BRN32_06020) - 1158107..1158772 (+) 666 WP_011257995.1 type 4a pilus biogenesis protein PilO -
  BRN32_RS06025 (BRN32_06025) - 1158769..1159302 (+) 534 WP_011257996.1 pilus assembly protein PilP -
  BRN32_RS06030 (BRN32_06030) - 1159322..1161271 (+) 1950 WP_011407796.1 type IV pilus secretin PilQ family protein -
  BRN32_RS06035 (BRN32_06035) - 1161331..1161784 (-) 454 Protein_1078 IS5 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37726.44 Da        Isoelectric Point: 4.3924

>NTDB_id=306935 BRN32_RS06010 WP_069964966.1 1156294..1157352(+) (comM) [Xanthomonas oryzae pv. oryzae strain OS198]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYTREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=306935 BRN32_RS06010 WP_069964966.1 1156294..1157352(+) (comM) [Xanthomonas oryzae pv. oryzae strain OS198]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATACCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment