Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DXX91_RS14960 Genome accession   NZ_CP031424
Coordinates   3004619..3005263 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain B-4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999619..3010263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS14925 - 3000804..3001235 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  DXX91_RS14930 - 3001235..3001576 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DXX91_RS14935 - 3001569..3003050 (+) 1482 WP_095318383.1 Na+/H+ antiporter subunit D -
  DXX91_RS14940 - 3003056..3003532 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  DXX91_RS14945 - 3003532..3003816 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  DXX91_RS14950 mnhG 3003800..3004174 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DXX91_RS14955 - 3004214..3004597 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  DXX91_RS14960 comA 3004619..3005263 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DXX91_RS14965 - 3005344..3007634 (-) 2291 Protein_2868 histidine kinase -
  DXX91_RS14970 comX 3007646..3007810 (-) 165 WP_007613432.1 competence pheromone ComX -
  DXX91_RS14975 - 3007810..3008688 (-) 879 WP_024085740.1 polyprenyl synthetase family protein -
  DXX91_RS14980 degQ 3008872..3009012 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DXX91_RS14985 - 3009478..3009819 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=306704 DXX91_RS14960 WP_003152052.1 3004619..3005263(-) (comA) [Bacillus velezensis strain B-4]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=306704 DXX91_RS14960 WP_003152052.1 3004619..3005263(-) (comA) [Bacillus velezensis strain B-4]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment