Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DK878_RS08900 Genome accession   NZ_CP031379
Coordinates   1796487..1796981 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain ISU2660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1791487..1801981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS08885 (DK878_09145) - 1794208..1795152 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  DK878_RS08890 (DK878_09150) - 1795168..1795824 (+) 657 WP_009910733.1 DUF1129 domain-containing protein -
  DK878_RS08895 (DK878_09155) rpsR 1796215..1796454 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  DK878_RS08900 (DK878_09160) ssbA 1796487..1796981 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  DK878_RS08905 (DK878_09165) rpsF 1796993..1797283 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  DK878_RS08910 (DK878_09170) - 1797455..1798444 (-) 990 WP_024386694.1 lipoate--protein ligase -
  DK878_RS08915 (DK878_09175) - 1798528..1799967 (-) 1440 WP_002937719.1 6-phospho-beta-glucosidase -
  DK878_RS08920 (DK878_09180) - 1799964..1800581 (-) 618 WP_002937720.1 histidine phosphatase family protein -
  DK878_RS08925 (DK878_09185) - 1800593..1801195 (-) 603 WP_002937724.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=306413 DK878_RS08900 WP_002942409.1 1796487..1796981(-) (ssbA) [Streptococcus suis strain ISU2660]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=306413 DK878_RS08900 WP_002942409.1 1796487..1796981(-) (ssbA) [Streptococcus suis strain ISU2660]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment