Detailed information NTG0030625

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SDEG_RS00295
• Genome accession: NC_012891
• Coordinates: 51097..52095 (+)
• Length: 332 a.a.
• NCBI ID: WP_003061489.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis GGS_124
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 46097..57095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDEG_RS00275 (SDEG_0054)	-	47010..48266 (+)	1257	WP_012766419.1	DUF4041 domain-containing protein	-
SDEG_RS00280	-	48259..48468 (+)	210	WP_014611912.1	hypothetical protein	-
SDEG_RS00285 (SDEG_0055)	purB	48517..49809 (+)	1293	WP_003056595.1	adenylosuccinate lyase	-
SDEG_RS00290 (SDEG_0056)	comR	49951..50862 (+)	912	WP_012766420.1	helix-turn-helix domain-containing protein	Regulator
SDEG_RS11265	comS	50949..51044 (+)	96	WP_198455558.1	quorum-sensing system DWW-type pheromone	Regulator
SDEG_RS00295 (SDEG_0057)	ruvB	51097..52095 (+)	999	WP_003061489.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SDEG_RS00300 (SDEG_0058)	-	52230..52661 (+)	432	WP_012766422.1	low molecular weight protein-tyrosine-phosphatase	-
SDEG_RS00305 (SDEG_0059)	-	52690..53091 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
SDEG_RS00310 (SDEG_0060)	-	53088..54863 (+)	1776	WP_003059359.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37214.69 Da
• Isoelectric Point: 4.5556

>NTDB_id=30625 SDEG_RS00295 WP_003061489.1 51097..52095(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MARILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATEK
AYRHLGYPCPSK

Nucleotide

• Length: 999 bp

>NTDB_id=30625 SDEG_RS00295 WP_003061489.1 51097..52095(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGGCTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAACTTGTTGAGCGAACGCTTCGTCCGCAGTATTTACGTGA
GTACATTGGGCAAGATAAGGTTAAGGAACAATTAACCATTTTTATTGAAGCGGCTAAGCTCCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAACTTG
AAGCAAACTTCAGGACCAGCGATTGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGACA
TTATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTGCCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTCGAACGAACAGCCGATATTTTTGACATGGAAATTGTTCACGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGATCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
CACCATGATTGAAATGTATCAGGGTGGACCTGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGCGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATGTCCGTCTAAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.458	100	0.895
ruvB	Streptococcus pneumoniae R6	89.157	100	0.892
ruvB	Streptococcus pneumoniae D39	89.157	100	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.061	98.795	0.593
ruvB	Helicobacter pylori 26695	50.459	98.494	0.497
ruvB	Synechocystis sp. PCC 6803	50	95.783	0.479