Detailed information NTG0306235

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: EW998_RS10380
• Genome accession: NZ_CP035874
• Coordinates: 2193833..2195260 (-)
• Length: 475 a.a.
• NCBI ID: WP_001394442.1
• Uniprot ID: -
• Organism: Escherichia coli strain B2C
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2188833..2200260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EW998_RS10350	yeeZ	2188888..2189712 (+)	825	WP_000754737.1	SDR family oxidoreductase	-
EW998_RS10355	yeeY	2189758..2190687 (+)	930	WP_000803360.1	LysR substrate-binding domain-containing protein	-
EW998_RS10360	yoeI	2190902..2190964 (+)	63	WP_010723108.1	membrane protein YoeI	-
EW998_RS10365	plaP	2190954..2192312 (+)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
EW998_RS10370	tsuA	2192491..2193549 (+)	1059	WP_023486796.1	thiosulfate utilization transporter TsuA/YeeE	-
EW998_RS10375	tsuB	2193563..2193790 (+)	228	WP_000985273.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
EW998_RS10380	sbcB	2193833..2195260 (-)	1428	WP_001394442.1	exodeoxyribonuclease I	Machinery gene
EW998_RS10390	dacD	2196808..2197971 (+)	1164	WP_032145576.1	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
EW998_RS10395	sbmC	2198090..2198563 (+)	474	WP_001394439.1	DNA gyrase inhibitor SbmC	-
EW998_RS10400	yeeA	2198761..2199819 (+)	1059	WP_001200905.1	FUSC family protein	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54514.84 Da
• Isoelectric Point: 5.4700

>NTDB_id=306235 EW998_RS10380 WP_001394442.1 2193833..2195260(-) (sbcB) [Escherichia coli strain B2C]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDKAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMIIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1428 bp

>NTDB_id=306235 EW998_RS10380 WP_001394442.1 2193833..2195260(-) (sbcB) [Escherichia coli strain B2C]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAAAG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGATAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (212-472)

• Exonuclease (RNase_T) (13-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	58.936	98.947	0.583