Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   DV427_RS02115 Genome accession   NZ_CP031240
Coordinates   444966..445475 (-) Length   169 a.a.
NCBI ID   WP_114891151.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439966..450475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS02085 nudC 440455..441252 (-) 798 WP_114891145.1 NAD(+) diphosphatase -
  DV427_RS02090 nfuA 441320..441916 (-) 597 WP_114891146.1 Fe-S biogenesis protein NfuA -
  DV427_RS02095 - 441992..442678 (-) 687 WP_114891147.1 ComF family protein -
  DV427_RS02100 comE 442691..444028 (-) 1338 WP_114891148.1 type IV pilus secretin PilQ family protein Machinery gene
  DV427_RS02105 comD 444038..444451 (-) 414 WP_114891149.1 competence protein Machinery gene
  DV427_RS02110 comC 444448..444969 (-) 522 WP_114891150.1 competence protein ComC Machinery gene
  DV427_RS02115 comB 444966..445475 (-) 510 WP_114891151.1 competence protein B Machinery gene
  DV427_RS02120 comA 445476..446273 (-) 798 WP_114891152.1 pilus assembly protein PilM Machinery gene
  DV427_RS02125 - 446372..448972 (+) 2601 WP_114891153.1 penicillin-binding protein 1A -
  DV427_RS02130 - 449045..449890 (+) 846 WP_114891154.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV427_RS02135 - 450059..450388 (+) 330 WP_114891155.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19908.73 Da        Isoelectric Point: 8.5439

>NTDB_id=304463 DV427_RS02115 WP_114891151.1 444966..445475(-) (comB) [Haemophilus haemolyticus strain M19345]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNVIEQQKQNLQAQQKSFEQLNQQLYKTTTQIDQLRSVVKVG
EVLHSLTNGQVQNSLQQLSELPLQKGELNRFKQDGHNLSLEGRAQDQMEFESVHQFLKQHFPNVKLSQVQPEQHTLFFRF
DVEEVGEDK

Nucleotide


Download         Length: 510 bp        

>NTDB_id=304463 DV427_RS02115 WP_114891151.1 444966..445475(-) (comB) [Haemophilus haemolyticus strain M19345]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTGCGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATGTGATTGAACAACAGAAACAAAATTTGCAGGCGCAGCAAA
AGTCTTTTGAGCAACTTAATCAGCAACTTTACAAAACTACCACGCAAATTGATCAGTTACGCAGTGTGGTGAAAGTTGGT
GAAGTTTTGCACTCTCTCACGAATGGGCAAGTTCAAAATAGTTTGCAGCAATTAAGTGAATTGCCTCTTCAGAAAGGCGA
ATTGAACCGATTTAAACAAGATGGTCATAACTTAAGTTTGGAGGGGCGAGCGCAAGATCAAATGGAATTTGAGTCGGTAC
ATCAATTTTTAAAGCAACATTTCCCCAATGTTAAATTAAGTCAAGTTCAGCCTGAGCAACATACATTGTTTTTTCGCTTT
GATGTGGAAGAAGTTGGAGAAGATAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

84.431

98.817

0.834
  comB Haemophilus influenzae Rd KW20

84.431

98.817

0.834

Multiple sequence alignment