Detailed information NTG0030401

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: HSM_RS03885
• Genome accession: NC_010519
• Coordinates: 873478..874698 (+)
• Length: 406 a.a.
• NCBI ID: WP_012341581.1
• Uniprot ID: A0A9Q7E4C6
• Organism: Histophilus somni 2336
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 868478..879698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSM_RS03850 (HSM_0752)	-	869985..870227 (+)	243	WP_011608610.1	hypothetical protein	-
HSM_RS03855 (HSM_0753)	-	870266..871000 (+)	735	WP_012341579.1	4'-phosphopantetheinyl transferase superfamily protein	-
HSM_RS03865 (HSM_0754)	gltX	871339..872781 (-)	1443	WP_012341580.1	glutamate--tRNA ligase	-
HSM_RS03885 (HSM_0755)	pilC	873478..874698 (+)	1221	WP_012341581.1	type II secretion system F family protein	Machinery gene
HSM_RS03890 (HSM_0756)	-	874695..875402 (+)	708	WP_011608614.1	A24 family peptidase	-
HSM_RS03895 (HSM_0757)	coaE	875422..876069 (+)	648	WP_012341582.1	dephospho-CoA kinase	-
HSM_RS03900 (HSM_0758)	yacG	876066..876260 (+)	195	WP_011608616.1	DNA gyrase inhibitor YacG	-
HSM_RS03905 (HSM_0760)	-	876664..878040 (+)	1377	WP_012341585.1	sodium:alanine symporter family protein	-
HSM_RS03910 (HSM_0761)	raiA	878276..878593 (+)	318	WP_012341586.1	ribosome-associated translation inhibitor RaiA	-
HSM_RS03915 (HSM_0762)	hpt	878797..879336 (+)	540	WP_011608620.1	hypoxanthine phosphoribosyltransferase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 46702.12 Da
• Isoelectric Point: 9.7933

>NTDB_id=30401 HSM_RS03885 WP_012341581.1 873478..874698(+) (pilC) [Histophilus somni 2336]
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISVILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQLKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide

• Length: 1221 bp

>NTDB_id=30401 HSM_RS03885 WP_012341581.1 873478..874698(+) (pilC) [Histophilus somni 2336]
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCCAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAATTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGGTTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTCTTAAGTATTTCTGTCATTCTCACCGCACTTCTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAGCTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACTCAAAAAAGATTGGTTTTTATCGCATGTGCCGTTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTCTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (64-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Haemophilus influenzae Rd KW20	53.431	100	0.537
pilC	Haemophilus influenzae 86-028NP	53.102	99.261	0.527
pilC	Glaesserella parasuis strain SC1401	39.901	100	0.399