Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN409_RS00220 Genome accession   NZ_CP031071
Coordinates   40491..40775 (-) Length   94 a.a.
NCBI ID   WP_000843037.1    Uniprot ID   A0A366FUU6
Organism   Bacillus mycoides strain BPN401     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35491..45775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN409_RS00185 (DN409_00185) tmk 35645..36271 (+) 627 WP_002009634.1 dTMP kinase -
  DN409_RS00190 (DN409_00190) holB 36307..37290 (+) 984 WP_002009636.1 DNA polymerase III subunit delta' -
  DN409_RS00195 (DN409_00195) - 37296..38123 (+) 828 WP_002009637.1 stage 0 sporulation family protein -
  DN409_RS00200 (DN409_00200) yabA 38138..38488 (+) 351 WP_002009639.1 DNA replication initiation control protein YabA -
  DN409_RS00205 (DN409_00205) - 38609..39349 (+) 741 WP_002130206.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DN409_RS00210 (DN409_00210) - 39336..39626 (+) 291 WP_002130207.1 GIY-YIG nuclease family protein -
  DN409_RS00215 (DN409_00215) rsmI 39595..40470 (+) 876 WP_002130208.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DN409_RS00220 (DN409_00220) abrB 40491..40775 (-) 285 WP_000843037.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN409_RS00225 (DN409_00225) metG 41297..43279 (+) 1983 WP_061689480.1 methionine--tRNA ligase -
  DN409_RS00230 (DN409_00230) - 43445..44212 (+) 768 WP_002009645.1 TatD family hydrolase -
  DN409_RS00235 (DN409_00235) rnmV 44473..45030 (+) 558 WP_002029323.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10476.14 Da        Isoelectric Point: 4.7174

>NTDB_id=303191 DN409_RS00220 WP_000843037.1 40491..40775(-) (abrB) [Bacillus mycoides strain BPN401]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=303191 DN409_RS00220 WP_000843037.1 40491..40775(-) (abrB) [Bacillus mycoides strain BPN401]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGATGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGTAAAGAAGGCGCTGAA
CAAGTCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366FUU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84

Multiple sequence alignment