Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DAUD_RS11235 Genome accession   NC_010424
Coordinates   2328620..2329048 (-) Length   142 a.a.
NCBI ID   WP_012303276.1    Uniprot ID   -
Organism   Candidatus Desulforudis audaxviator MP104C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2323620..2334048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAUD_RS11210 (Daud_2210) - 2324108..2325484 (-) 1377 WP_012303271.1 NAD(P)/FAD-dependent oxidoreductase -
  DAUD_RS11215 (Daud_2211) dnaB 2325545..2326873 (-) 1329 WP_012303272.1 replicative DNA helicase -
  DAUD_RS11220 (Daud_2212) rplI 2326863..2327315 (-) 453 WP_012303273.1 50S ribosomal protein L9 -
  DAUD_RS11225 (Daud_2213) - 2327312..2328214 (-) 903 WP_012303274.1 DUF2232 domain-containing protein -
  DAUD_RS11230 (Daud_2214) rpsR 2328349..2328576 (-) 228 WP_012303275.1 30S ribosomal protein S18 -
  DAUD_RS11235 (Daud_2215) ssbA 2328620..2329048 (-) 429 WP_012303276.1 single-stranded DNA-binding protein Machinery gene
  DAUD_RS11240 (Daud_2216) rpsF 2329071..2329355 (-) 285 WP_012303277.1 30S ribosomal protein S6 -
  DAUD_RS11245 (Daud_2217) - 2329853..2330530 (-) 678 WP_012303278.1 hypothetical protein -
  DAUD_RS12615 - 2330790..2330948 (-) 159 WP_166485190.1 hypothetical protein -
  DAUD_RS11250 (Daud_2218) ychF 2331263..2332354 (-) 1092 WP_041570973.1 redox-regulated ATPase YchF -
  DAUD_RS11255 (Daud_2219) - 2332357..2332569 (-) 213 WP_012303280.1 DUF951 domain-containing protein -
  DAUD_RS11260 (Daud_2220) - 2332601..2333275 (-) 675 WP_012303281.1 CvpA family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15934.95 Da        Isoelectric Point: 5.8046

>NTDB_id=30174 DAUD_RS11235 WP_012303276.1 2328620..2329048(-) (ssbA) [Candidatus Desulforudis audaxviator MP104C]
MLNKIILIGRLARDPELRYTPSGTPVAGFTVAVDRPFVDKQGNRGTDFIDVVAWRKLGETCARHLGKGRLVCVEGRLELR
SYEDNQGIRRKVAEVIADNVRFLDGPRGLGTPHDQNEQVKSGEGQPYRNEIDFSDDDEPLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=30174 DAUD_RS11235 WP_012303276.1 2328620..2329048(-) (ssbA) [Candidatus Desulforudis audaxviator MP104C]
ATGTTAAACAAAATAATCCTGATCGGGCGTCTGGCCAGGGATCCCGAACTCCGGTACACGCCGAGCGGGACACCGGTGGC
CGGGTTCACCGTGGCGGTCGATCGCCCCTTTGTGGACAAACAGGGGAACCGGGGTACCGATTTCATCGACGTGGTGGCCT
GGCGCAAACTGGGTGAGACTTGTGCGCGGCATCTGGGCAAGGGGCGGCTTGTGTGTGTGGAGGGGCGCCTGGAGTTGCGG
TCGTATGAGGACAACCAGGGTATCCGGCGCAAGGTGGCCGAGGTGATCGCCGATAACGTCCGGTTTCTGGACGGACCGCG
AGGTCTGGGCACACCGCACGACCAGAATGAGCAGGTCAAATCAGGTGAAGGACAACCCTACCGGAACGAGATTGATTTTT
CCGACGATGACGAACCACTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

40.805

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

38.953

100

0.472
  ssbB/cilA Streptococcus mitis SK321

37.324

100

0.373
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.62

100

0.366

Multiple sequence alignment