Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DPR03_RS08045 Genome accession   NZ_CP030754
Coordinates   1671615..1672658 (+) Length   347 a.a.
NCBI ID   WP_005221756.1    Uniprot ID   A0AAE2MVZ4
Organism   Acinetobacter schindleri strain H3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666615..1677658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS08015 - 1667031..1667696 (-) 666 WP_004812676.1 NAD-dependent epimerase/dehydratase family protein -
  DPR03_RS08020 rpsT 1667911..1668180 (+) 270 WP_004786139.1 30S ribosomal protein S20 -
  DPR03_RS16280 - 1668430..1668555 (-) 126 WP_257230431.1 hypothetical protein -
  DPR03_RS08025 - 1668675..1669424 (-) 750 WP_071320543.1 histidine phosphatase family protein -
  DPR03_RS08030 - 1669485..1670336 (-) 852 WP_071320544.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DPR03_RS08035 - 1670349..1671035 (+) 687 WP_071320545.1 HAD-IA family hydrolase -
  DPR03_RS08040 - 1671028..1671468 (+) 441 WP_004812671.1 RNA-binding S4 domain-containing protein -
  DPR03_RS08045 recA 1671615..1672658 (+) 1044 WP_005221756.1 recombinase RecA Machinery gene
  DPR03_RS08050 - 1672736..1673353 (+) 618 WP_071320546.1 regulatory protein RecX -
  DPR03_RS08060 - 1673954..1674775 (+) 822 WP_071320547.1 YbgF trimerization domain-containing protein -
  DPR03_RS08065 lpxA 1674832..1675620 (-) 789 WP_004894416.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  DPR03_RS08070 fabZ 1675617..1676102 (-) 486 WP_026056779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DPR03_RS08075 lpxD 1676108..1677178 (-) 1071 WP_071320548.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37663.09 Da        Isoelectric Point: 4.9489

>NTDB_id=301327 DPR03_RS08045 WP_005221756.1 1671615..1672658(+) (recA) [Acinetobacter schindleri strain H3]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEENKALADTIEK
LIREQLLTTGNVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=301327 DPR03_RS08045 WP_005221756.1 1671615..1672658(+) (recA) [Acinetobacter schindleri strain H3]
ATGGATGAGAATAAAAACAAGGCGCTGAATGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGCAAAAACACAGTAATGCG
TCTTGGTGACAATACCGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTAACGCTTGATATCGCGCTCGGTATTGGTG
GTTTACCAAAAGGCCGTATTGTCGAGATCTATGGTCCTGAATCTTCAGGTAAAACCACAATGACATTACAAGCGATTGCA
GAATGTCAAAAAGCTGGTGGTACTTGTGCATTCATCGATGCGGAACACGCGCTTGATCCTCAATATGCACGTAAATTGGG
TGTAGATATCGACAACCTGCTGGTATCTCAACCCGATCATGGTGAACAGGCACTTGAAATTGCCGACATGCTTGTACGTT
CAGGCGCGATTGACCTGATCGTTGTCGACTCCGTAGCTGCCCTGACCCCTCGTGCTGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGTCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATCACTGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAGTCCGGAAACTACTACTGGTGGTAATGCAC
TGAAATTCTATGCTTCTGTACGTCTGGATATCCGACGTATTGGTCAGGTAAAAGAAGGTGACGAAATCGTTGGTTCTGAA
ACTAAAGTTAAAGTTGTGAAGAACAAAATGGCGCCTCCATTTAAGGAAGCTCTATTCCAAATTCTGTATGGTAAAGGTGT
AAACCATCTCGGCGAACTGATTGACCTTGCAGTACAGCAGGAAATCGTACAGAAAGCCGGTGCTTGGTACTCTTATCAAG
GTGACAAGATTGGCCAAGGCAAGAACAACACCATTCGTTATCTGGAAGAGAACAAAGCACTTGCAGATACCATTGAAAAA
CTGATTCGTGAGCAGCTTTTGACGACAGGCAATGTAGTTGAAGATAAAGACGAAGAAGAACCAGCAGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.258

100

0.908
  recA Acinetobacter baylyi ADP1

89.714

100

0.905
  recA Pseudomonas stutzeri DSM 10701

75.988

94.813

0.72
  recA Vibrio cholerae strain A1552

74.096

95.677

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.096

95.677

0.709
  recA Glaesserella parasuis strain SC1401

70.393

95.389

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.93

90.49

0.66
  recA Neisseria gonorrhoeae MS11

63.793

100

0.64
  recA Neisseria gonorrhoeae MS11

63.793

100

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.793

100

0.64
  recA Helicobacter pylori strain NCTC11637

63.422

97.695

0.62
  recA Helicobacter pylori 26695

63.127

97.695

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.389

0.602
  recA Streptococcus pneumoniae R6

60.465

99.135

0.599
  recA Streptococcus pneumoniae Rx1

60.465

99.135

0.599
  recA Streptococcus pneumoniae D39

60.465

99.135

0.599
  recA Streptococcus pneumoniae TIGR4

60.465

99.135

0.599
  recA Streptococcus mutans UA159

60.641

98.847

0.599
  recA Streptococcus mitis NCTC 12261

59.767

98.847

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.795

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

93.948

0.579
  recA Streptococcus mitis SK321

61.35

93.948

0.576
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.507

0.548

Multiple sequence alignment