Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CSC60_RS08480 | Genome accession | NZ_CP030323 |
| Coordinates | 1661918..1662229 (+) | Length | 103 a.a. |
| NCBI ID | WP_000472256.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AR_475 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1656918..1667229
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC60_RS08450 (CSC60_1557) | - | 1657701..1657904 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| CSC60_RS08455 (CSC60_1558) | - | 1657901..1658887 (+) | 987 | WP_000161315.1 | ROK family glucokinase | - |
| CSC60_RS08460 (CSC60_1559) | - | 1658887..1659216 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| CSC60_RS08465 (CSC60_1560) | - | 1659213..1659836 (+) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| CSC60_RS08470 (CSC60_1561) | comGA | 1659888..1660862 (+) | 975 | WP_000697218.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CSC60_RS08475 (CSC60_1562) | comGB | 1660834..1661904 (+) | 1071 | WP_000776407.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CSC60_RS08480 (CSC60_1563) | comGC | 1661918..1662229 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CSC60_RS08485 (CSC60_1564) | comGD | 1662207..1662653 (+) | 447 | WP_001796473.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CSC60_RS08490 (CSC60_1565) | comGE | 1662640..1662939 (+) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| CSC60_RS08495 (CSC60_1566) | comGF | 1662857..1663354 (+) | 498 | WP_001838632.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CSC60_RS08500 | - | 1663451..1663597 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| CSC60_RS08505 (CSC60_1567) | - | 1663587..1664111 (+) | 525 | WP_001015116.1 | shikimate kinase | - |
| CSC60_RS08510 (CSC60_1568) | gcvT | 1664270..1665361 (+) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CSC60_RS08515 (CSC60_1569) | gcvPA | 1665381..1666727 (+) | 1347 | WP_000019687.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11315.36 Da Isoelectric Point: 8.5268
>NTDB_id=300800 CSC60_RS08480 WP_000472256.1 1661918..1662229(+) (comGC) [Staphylococcus aureus strain AR_475]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=300800 CSC60_RS08480 WP_000472256.1 1661918..1662229(+) (comGC) [Staphylococcus aureus strain AR_475]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
100 |
100 |
1 |
| comGC | Staphylococcus aureus N315 |
100 |
100 |
1 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
51.163 |
83.495 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.163 |
83.495 |
0.427 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |