Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   ETL58_RS05755 Genome accession   NZ_CP035413
Coordinates   1082339..1085230 (+) Length   963 a.a.
NCBI ID   WP_003233256.1    Uniprot ID   O08455
Organism   Bacillus subtilis strain SRCM103629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077339..1090230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS05730 (ETL58_05730) yhaR 1077753..1078520 (+) 768 WP_003245167.1 enoyl-CoA hydratase -
  ETL58_RS05735 (ETL58_05735) yhzD 1078541..1078726 (-) 186 WP_003233264.1 YhzD family protein -
  ETL58_RS05740 (ETL58_05740) yhaQ 1078853..1079749 (+) 897 WP_101172520.1 ABC transporter ATP-binding protein -
  ETL58_RS05745 (ETL58_05745) yhaP 1079742..1081001 (+) 1260 WP_003244912.1 ABC transporter permease -
  ETL58_RS05750 (ETL58_05750) yhaO 1081108..1082334 (+) 1227 WP_101172519.1 exonuclease SbcCD subunit D -
  ETL58_RS05755 (ETL58_05755) sbcE 1082339..1085230 (+) 2892 WP_003233256.1 DNA repair/recombination ATPase SbcE Machinery gene
  ETL58_RS05760 (ETL58_05760) yhaM 1085304..1086248 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  ETL58_RS05765 (ETL58_05765) yhaL 1086373..1086585 (+) 213 WP_003233252.1 sporulation protein YhaL -
  ETL58_RS05770 (ETL58_05770) prsA 1086626..1087504 (-) 879 WP_003245079.1 peptidylprolyl isomerase PrsA -
  ETL58_RS05775 (ETL58_05775) yhzE1 1087664..1087750 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  ETL58_RS05780 (ETL58_05780) yhzE2 1087875..1087961 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  ETL58_RS05785 (ETL58_05785) - 1088014..1088196 (-) 183 WP_024571667.1 hypothetical protein -
  ETL58_RS05790 (ETL58_05790) yhaJ 1088304..1088822 (-) 519 WP_014479336.1 DUF3267 domain-containing protein -
  ETL58_RS05795 (ETL58_05795) yhaI 1089030..1089371 (+) 342 WP_009966921.1 YhaI family protein -
  ETL58_RS05800 (ETL58_05800) scoC 1089368..1089979 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111159.16 Da        Isoelectric Point: 6.1206

>NTDB_id=300489 ETL58_RS05755 WP_003233256.1 1082339..1085230(+) (sbcE) [Bacillus subtilis strain SRCM103629]
MTALRIISLHIYQYGKFSNRTFDFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIAAISRQLKD
TENKLHHVNAQLQGGYPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGMVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGESKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=300489 ETL58_RS05755 WP_003233256.1 1082339..1085230(+) (sbcE) [Bacillus subtilis strain SRCM103629]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTGACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAGTATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTTAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACACGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTTTCAGGAAAGTCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TAGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGCCATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGTACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGAATGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTGAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTTTTCCGTCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGCACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGCTTTGCTTTGGCCGTTACGCGCCAGGGTGAGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CTGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O08455

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

100

100

1