Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ETK61_RS12775 Genome accession   NZ_CP035406
Coordinates   2353466..2354956 (-) Length   496 a.a.
NCBI ID   WP_129137765.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2348466..2359956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS12745 (ETK61_12750) gudB 2348605..2349879 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ETK61_RS12750 (ETK61_12755) mecB 2350035..2350619 (-) 585 WP_003230533.1 genetic competence negative regulator -
  ETK61_RS12755 (ETK61_12760) ypbG 2350777..2351556 (-) 780 WP_041053240.1 metallophosphoesterase -
  ETK61_RS12760 (ETK61_12765) ypbF 2351643..2352086 (-) 444 WP_003230531.1 YpbF family protein -
  ETK61_RS12765 (ETK61_12770) claE 2352149..2352886 (-) 738 WP_095843804.1 LysM peptidoglycan-binding domain-containing protein -
  ETK61_RS12770 (ETK61_12775) ypbD 2352837..2353439 (-) 603 WP_038429217.1 CPBP family intramembrane glutamic endopeptidase -
  ETK61_RS12775 (ETK61_12780) recS 2353466..2354956 (-) 1491 WP_129137765.1 ATP-dependent DNA helicase RecQ Machinery gene
  ETK61_RS12780 (ETK61_12785) gmmB 2354949..2356007 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  ETK61_RS12785 (ETK61_12790) fdxA 2356273..2356521 (+) 249 WP_003225461.1 ferredoxin -
  ETK61_RS12790 (ETK61_12795) fmnP 2356561..2357133 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  ETK61_RS12795 (ETK61_12800) serA 2357630..2359207 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56510.08 Da        Isoelectric Point: 6.6626

>NTDB_id=300237 ETK61_RS12775 WP_129137765.1 2353466..2354956(-) (recS) [Bacillus subtilis strain SRCM103612]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAKKIDRVIQLVENLQGPGIVYCPTRKW
SEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVSAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=300237 ETK61_RS12775 WP_129137765.1 2353466..2354956(-) (recS) [Bacillus subtilis strain SRCM103612]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCAAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
TCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCTCAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(216-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992