Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ETA15_RS22130 Genome accession   NZ_CP035403
Coordinates   634036..634314 (-) Length   92 a.a.
NCBI ID   WP_026113660.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 629036..639314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS03275 (ETA15_03275) pleJ 629246..631363 (+) 2118 WP_129093260.1 MMPL family transporter -
  ETA15_RS03280 (ETA15_03280) ydfK 631421..632110 (-) 690 WP_017695976.1 DUF554 domain-containing protein -
  ETA15_RS03285 (ETA15_03285) ydfL 632200..633012 (-) 813 WP_003234177.1 MerR family transcriptional regulator -
  ETA15_RS22125 - 633574..633897 (-) 324 WP_017695977.1 hypothetical protein -
  ETA15_RS22130 rapF 634036..634314 (-) 279 WP_026113660.1 hypothetical protein Regulator
  ETA15_RS03295 (ETA15_03295) - 634756..635481 (+) 726 WP_017695978.1 hypothetical protein -
  ETA15_RS03300 (ETA15_03300) - 635747..636988 (-) 1242 Protein_603 IS1182 family transposase -
  ETA15_RS03305 (ETA15_03305) mneP 637115..638008 (-) 894 WP_017695981.1 manganese transporter MneP -
  ETA15_RS03310 (ETA15_03310) ydfN 638484..639104 (+) 621 WP_017695982.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 11264.99 Da        Isoelectric Point: 4.8550

>NTDB_id=299863 ETA15_RS22130 WP_026113660.1 634036..634314(-) (rapF) [Bacillus subtilis strain SRCM103581]
MRDEVKEEIELMKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGS
MNWLLIKLLQTS

Nucleotide


Download         Length: 279 bp        

>NTDB_id=299863 ETA15_RS22130 WP_026113660.1 634036..634314(-) (rapF) [Bacillus subtilis strain SRCM103581]
ATGAGGGATGAAGTTAAGGAAGAAATCGAGCTAATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATT
CCGTCATGAATTAATGTTGGACTATCTCCATCCTGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAAC
TGAAAAATAACAATCAGAACCTCACAGGAATGTTAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGC
ATGAACTGGCTTCTAATTAAACTGTTACAGACAAGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

46.753

83.696

0.391