Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ETA15_RS11900 Genome accession   NZ_CP035403
Coordinates   2234080..2235570 (-) Length   496 a.a.
NCBI ID   WP_041053251.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2229080..2240570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS11870 (ETA15_11870) gudB 2229224..2230498 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ETA15_RS11875 (ETA15_11875) mecB 2230654..2231238 (-) 585 WP_003230533.1 genetic competence negative regulator -
  ETA15_RS11880 (ETA15_11880) ypbG 2231397..2232176 (-) 780 WP_041053240.1 metallophosphoesterase -
  ETA15_RS11885 (ETA15_11885) ypbF 2232263..2232706 (-) 444 WP_003230531.1 YpbF family protein -
  ETA15_RS11890 (ETA15_11890) claE 2232769..2233500 (-) 732 WP_041053250.1 LysM peptidoglycan-binding domain-containing protein -
  ETA15_RS11895 (ETA15_11895) ypbD 2233451..2234053 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  ETA15_RS11900 (ETA15_11900) recS 2234080..2235570 (-) 1491 WP_041053251.1 ATP-dependent DNA helicase RecQ Machinery gene
  ETA15_RS11905 (ETA15_11905) gmmB 2235563..2236621 (-) 1059 WP_041053252.1 helix-turn-helix domain-containing protein -
  ETA15_RS11910 (ETA15_11910) fdxA 2236887..2237135 (+) 249 WP_003225461.1 ferredoxin -
  ETA15_RS11915 (ETA15_11915) - 2237280..2238638 (-) 1359 WP_041339714.1 IS1182 family transposase -
  ETA15_RS11920 (ETA15_11920) fmnP 2238755..2239327 (-) 573 WP_004399159.1 riboflavin transporter FmnP -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56526.18 Da        Isoelectric Point: 6.5562

>NTDB_id=299798 ETA15_RS11900 WP_041053251.1 2234080..2235570(-) (recS) [Bacillus subtilis strain SRCM103581]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENVADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTTEEIADVIRMLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=299798 ETA15_RS11900 WP_041053251.1 2234080..2235570(-) (recS) [Bacillus subtilis strain SRCM103581]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGGCACGACTTCAGGCCTGATTATTCAAAGCTCGGGCAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGTGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAACTGAAGAAATCGCCGACGTGATCCGTATGCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

98.79

100

0.988