Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ETA15_RS02595 Genome accession   NZ_CP035403
Coordinates   516204..516638 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 511204..521638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS02565 (ETA15_02565) ydaD 511853..512713 (+) 861 WP_017697338.1 SDR family oxidoreductase -
  ETA15_RS02570 (ETA15_02570) lyxE 512729..513232 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ETA15_RS02575 (ETA15_02575) ydaF 513321..513872 (+) 552 WP_017697339.1 GNAT family protein -
  ETA15_RS02580 (ETA15_02580) ydaG 513950..514372 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ETA15_RS02585 (ETA15_02585) amj 514875..515684 (+) 810 WP_003234394.1 lipid II flippase Amj -
  ETA15_RS02590 (ETA15_02590) ydzA 515729..516019 (-) 291 WP_017697340.1 DUF3817 domain-containing protein -
  ETA15_RS02595 (ETA15_02595) lrpC 516204..516638 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ETA15_RS02600 (ETA15_02600) topB 516703..518886 (+) 2184 WP_017697341.1 DNA topoisomerase III -
  ETA15_RS02605 (ETA15_02605) ephJ 519089..520177 (+) 1089 WP_129093228.1 lipoprotein YdaJ -
  ETA15_RS02610 (ETA15_02610) epsK 520158..521009 (+) 852 Protein_471 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=299738 ETA15_RS02595 WP_003246585.1 516204..516638(+) (lrpC) [Bacillus subtilis strain SRCM103581]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=299738 ETA15_RS02595 WP_003246585.1 516204..516638(+) (lrpC) [Bacillus subtilis strain SRCM103581]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1