Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SP70585_RS00150 Genome accession   NC_012468
Coordinates   22901..23137 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 70585     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 17901..28137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS11880 (SP70585_0023) - 21901..22110 (+) 210 Protein_15 transposase -
  SP70585_RS11885 - 22119..22635 (-) 517 Protein_16 ISL3 family transposase -
  SP70585_RS00150 (SP70585_0026) comW 22901..23137 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  SP70585_RS00155 (SP70585_0027) - 23368..24654 (+) 1287 WP_041170973.1 adenylosuccinate synthase -
  SP70585_RS00160 (SP70585_0028) - 24896..26044 (-) 1149 WP_000876735.1 site-specific integrase -
  SP70585_RS00165 (SP70585_0029) - 26216..27130 (-) 915 WP_000690123.1 HIRAN domain-containing protein -
  SP70585_RS00170 (SP70585_0030) - 27142..27525 (-) 384 WP_000136460.1 ImmA/IrrE family metallo-endopeptidase -
  SP70585_RS00175 (SP70585_0031) - 27538..27903 (-) 366 WP_000484469.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=29969 SP70585_RS00150 WP_000939546.1 22901..23137(+) (comW) [Streptococcus pneumoniae 70585]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=29969 SP70585_RS00150 WP_000939546.1 22901..23137(+) (comW) [Streptococcus pneumoniae 70585]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGGTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment