Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB432_RS12450 Genome accession   NZ_CP030117
Coordinates   2455594..2457318 (+) Length   574 a.a.
NCBI ID   WP_048032546.1    Uniprot ID   A0A2Z4MH68
Organism   Brevibacillus brevis strain DZQ7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2450594..2462318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB432_RS12430 (AB432_012430) dxs 2451435..2453321 (+) 1887 WP_048032543.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB432_RS12435 (AB432_012435) - 2453318..2454136 (+) 819 WP_048032544.1 TlyA family RNA methyltransferase -
  AB432_RS12440 (AB432_012440) - 2454265..2455122 (+) 858 WP_048032545.1 NAD(+)/NADH kinase -
  AB432_RS12445 (AB432_012445) ahrC 2455128..2455577 (+) 450 WP_007720787.1 transcriptional regulator AhrC/ArgR -
  AB432_RS12450 (AB432_012450) recN 2455594..2457318 (+) 1725 WP_048032546.1 DNA repair protein RecN Machinery gene
  AB432_RS12455 (AB432_012455) spoIVB 2457555..2458889 (+) 1335 WP_048032547.1 SpoIVB peptidase -
  AB432_RS12460 (AB432_012460) spo0A 2459149..2459937 (+) 789 WP_007720793.1 sporulation transcription factor Spo0A -
  AB432_RS12475 (AB432_012475) - 2460695..2461144 (+) 450 WP_235617675.1 hypothetical protein -
  AB432_RS12480 (AB432_012480) - 2461259..2461837 (+) 579 WP_048035787.1 beta-class carbonic anhydrase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64584.56 Da        Isoelectric Point: 4.7482

>NTDB_id=299378 AB432_RS12450 WP_048032546.1 2455594..2457318(+) (recN) [Brevibacillus brevis strain DZQ7]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLAVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGAAK
QEYGTLYGAYRKTKQDLERMARNDRELVQRMDLLQYQLDEIEAATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILEMVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQELAADLAVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVR
QTPDDDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDERVSELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=299378 AB432_RS12450 WP_048032546.1 2455594..2457318(+) (recN) [Brevibacillus brevis strain DZQ7]
ATGCTAGTGGAACTCTCGATCCGAAATTTTGCCATCATTAAATCAGTGACGGTCTCTTTCCAAAAAGGCTTAAACATCCT
GACAGGGGAGACTGGTGCCGGTAAATCCATCATTATCGATGCACTAGGATTATTGTTAGGAGGCCGGGCTTCGGCTGATT
TTGTCCGTTACGGTGAGCCTCGTGCAGAAGTGGAAGGACTATTTGAATTGCCGCCTGGTCATCCTGGACTTGCCGTTTGT
AAAAATGTCGGCGTTCAGATTGAGCAAGACGGAATGCTTGTTGTACGCCGAGATATATCGAATCAAGGGAAGAGTATCAT
TCGAATCAATGGCCAGCTCGTTACTCTCGCTATGCTGCGTGAGTTGGGGCCATGGCTGGTTACGGTGCATGGACAACACG
ATACGCATATGCTGATGCAGTCAGACAAGCATATCAATTGGCTCGATGCATATGGGGAAAGTGCGTTAGGAGCTGCGAAG
CAAGAGTACGGCACCCTGTATGGGGCTTACCGCAAAACAAAGCAAGATCTGGAGCGTATGGCACGAAATGATCGGGAGCT
CGTACAGCGTATGGATCTATTGCAATATCAGCTCGATGAAATTGAGGCGGCAACCCTCACACCTGGTGAAGACGAGAAGC
TCATGCAGCAACGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATACCGCGCTTTACATGGT
GACCAAAAGGGCATGGATTGGTTAGGACATGCGATGGGAGAGCTCGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAGATGGTCCAATCGGCATACTATCAGATAGAAGATGTGGTACATAACCTTCGCCAATTGTCGTACCAAATGG
ATTTTGAACCGGAGCAGTTGGCGGAAGTAGAACGTCGTCTTGATCAAATCCAGTCGCTAAAGCGCAAGTATGGCAAAAGT
GTAGACGATATTTTGGAATACGCTGCCACGATTCAGGATGAATTGGATGACATGCATCACTACGAAGACCGCCTCCAGCA
GGTGGAAAAGCAATTGCAGGAGCTTGCAGCCGATTTGGCAGTGGAGGCATTGGAGTTGTCGGTCATTCGTTCCGAATGTG
CAGGAAAACTCGCACAAGAAATCGAGCAGCAGCTAAAAGAACTGCACATGGAGCGTGCTCGTTTTGCCATCGACGTTAGA
CAGACGCCGGATGATGACGGAGTAGAAATCGACGGAATCAAGCGCTTTGTAGATGCGAACGGCATGGATCAGATCGAGTT
TTTAATCTCACCTAACCCTGGTGAGCCATTGCGTCCGTTGGCGAAGATTGCTTCCGGCGGGGAGCTGTCACGCGTCATGC
TGGCCATTAAAACGATTTTGGCGGGCACTGATCAAGTGGAGACCCTTATTTTTGATGAAGTCGACACGGGTGTAAGCGGA
AGGGCGGCTCAAGCGATAGCAGAAAAGCTCGCCCGGGTTGCTGGGCAACGTCAGGTCCTGTGCATTACGCACTTGCCACA
GGTCGCATCCATGGCAGACGCGCATTTTCTGATCAAAAAGGAAATGAGCGAGAATGAAACAGAGACGCGGGTCAATCGTT
TGTCTGATGATGAACGGGTATCCGAGCTGGCTCGCATGCTAAGCGGGGCAGAGGTAACAGCGAAAACAGAAGAACATGCG
CGCGAGATGATCCTTCTCGGCCGTGAAAGAAAGACTGTCAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4MH68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.264

100

0.484

Multiple sequence alignment