Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH20_RS05830 Genome accession   NZ_CP035260
Coordinates   1179362..1181110 (-) Length   582 a.a.
NCBI ID   WP_001862800.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174362..1186110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS05785 (EQH20_06095) - 1174502..1175089 (-) 588 WP_000821279.1 CPBP family intramembrane glutamic endopeptidase -
  EQH20_RS05790 - 1175092..1175325 (-) 234 Protein_1155 transcriptional regulator -
  EQH20_RS05795 (EQH20_06100) - 1175338..1175718 (-) 381 WP_000566531.1 arsenate reductase family protein -
  EQH20_RS05800 (EQH20_06105) - 1175711..1176049 (-) 339 Protein_1157 hypothetical protein -
  EQH20_RS05805 (EQH20_06110) - 1176045..1176295 (-) 251 Protein_1158 replication initiator protein A -
  EQH20_RS05810 (EQH20_06115) - 1176295..1176465 (-) 171 WP_001168347.1 hypothetical protein -
  EQH20_RS05815 (EQH20_06120) rplL 1176652..1177020 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  EQH20_RS05820 (EQH20_06125) rplJ 1177096..1177596 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  EQH20_RS05825 (EQH20_06135) - 1177846..1179105 (-) 1260 WP_001818502.1 TRZ/ATZ family protein -
  EQH20_RS05830 (EQH20_06140) rcrQ 1179362..1181110 (-) 1749 WP_001862800.1 ABC transporter ATP-binding protein Regulator
  EQH20_RS05835 (EQH20_06145) - 1181112..1182836 (-) 1725 WP_000681699.1 ABC transporter ATP-binding protein -
  EQH20_RS05840 (EQH20_06150) msrB 1182894..1183832 (-) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EQH20_RS05845 (EQH20_06155) - 1183899..1184051 (-) 153 WP_001835993.1 hypothetical protein -
  EQH20_RS05850 (EQH20_06160) thrB 1184127..1184996 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64888.42 Da        Isoelectric Point: 7.3120

>NTDB_id=297450 EQH20_RS05830 WP_001862800.1 1179362..1181110(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901925]
MKRQTVNQTLKRLVVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFVKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=297450 EQH20_RS05830 WP_001862800.1 1179362..1181110(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901925]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGTCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCCTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGCATCATTGAGACAGCAGTTTGGCATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGTAAAACTCATGAAGGGCCGCACAAGTTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.544

96.564

0.363