Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EQH28_RS09085 Genome accession   NZ_CP035252
Coordinates   1795743..1796120 (-) Length   125 a.a.
NCBI ID   WP_000580361.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901934     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1790743..1801120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH28_RS09060 (EQH28_09595) - 1791061..1791594 (+) 534 WP_000775321.1 DUF402 domain-containing protein -
  EQH28_RS09065 - 1791952..1792158 (-) 207 WP_000775827.1 transcriptional regulator -
  EQH28_RS09070 (EQH28_09610) - 1792319..1793548 (+) 1230 WP_000436495.1 ISL3 family transposase -
  EQH28_RS09075 (EQH28_09615) groL 1793648..1795270 (-) 1623 WP_000031585.1 chaperonin GroEL -
  EQH28_RS09080 (EQH28_09620) groES 1795286..1795570 (-) 285 WP_000917339.1 co-chaperone GroES -
  EQH28_RS09085 (EQH28_09625) ssbB/cilA 1795743..1796120 (-) 378 WP_000580361.1 single-stranded DNA-binding protein Machinery gene
  EQH28_RS09090 (EQH28_09630) - 1796147..1796389 (-) 243 WP_000698517.1 hypothetical protein -
  EQH28_RS09095 (EQH28_09635) lytA 1796621..1797577 (-) 957 WP_000350534.1 N-acetylmuramoyl-L-alanine amidase LytA -
  EQH28_RS09100 (EQH28_09640) - 1797583..1797912 (-) 330 WP_001186214.1 phage holin -
  EQH28_RS09105 (EQH28_09645) - 1797916..1798215 (-) 300 WP_001810279.1 hypothetical protein -
  EQH28_RS09110 (EQH28_09650) - 1798225..1798575 (-) 351 WP_050247393.1 hypothetical protein -
  EQH28_RS09115 (EQH28_09655) - 1798578..1798781 (-) 204 WP_001091123.1 hypothetical protein -
  EQH28_RS09120 (EQH28_09660) - 1798762..1798878 (-) 117 WP_001063633.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14176.95 Da        Isoelectric Point: 5.2813

>NTDB_id=296741 EQH28_RS09085 WP_000580361.1 1795743..1796120(-) (ssbB/cilA) [Streptococcus pneumoniae strain TVO_1901934]
MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNG
QMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=296741 EQH28_RS09085 WP_000580361.1 1795743..1796120(-) (ssbB/cilA) [Streptococcus pneumoniae strain TVO_1901934]
TTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGCGCGAGCAACTATCGCTGT
CAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTATGGGGCAGACTAGCAGAAA
CTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGTCGCTTTGAGAAAAATGGT
CAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCAACGTGCTATGCGTGAAAA
TAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.