Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EQH31_RS06285 Genome accession   NZ_CP035249
Coordinates   1232829..1233275 (-) Length   148 a.a.
NCBI ID   WP_001082058.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901938     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227829..1238275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH31_RS06255 (EQH31_06615) - 1228174..1229109 (+) 936 WP_000401798.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  EQH31_RS06260 (EQH31_06620) - 1229205..1229447 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EQH31_RS06265 (EQH31_06625) - 1229504..1229722 (-) 219 WP_001818873.1 hypothetical protein -
  EQH31_RS06270 (EQH31_06630) - 1229719..1230453 (-) 735 Protein_1260 transposase -
  EQH31_RS06275 (EQH31_06635) gdhA 1230794..1232140 (+) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  EQH31_RS06280 (EQH31_06645) - 1232646..1232816 (-) 171 WP_000711939.1 hypothetical protein -
  EQH31_RS06285 (EQH31_06650) comA/nlmT 1232829..1233275 (-) 447 WP_001082058.1 ATP-binding cassette domain-containing protein Regulator
  EQH31_RS06290 (EQH31_06655) - 1233423..1234228 (-) 806 Protein_1264 IS5 family transposase -
  EQH31_RS06295 (EQH31_06670) - 1234491..1235056 (+) 566 Protein_1265 IS630 family transposase -
  EQH31_RS06300 (EQH31_06675) - 1235168..1235617 (-) 450 WP_000424223.1 YhcH/YjgK/YiaL family protein -
  EQH31_RS06305 (EQH31_06680) cdd 1235630..1236035 (-) 406 Protein_1267 cytidine deaminase -
  EQH31_RS06315 (EQH31_06685) - 1236122..1236577 (-) 456 WP_001000318.1 HIT family protein -
  EQH31_RS06320 (EQH31_06690) - 1236599..1238059 (-) 1461 WP_000272434.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16608.26 Da        Isoelectric Point: 7.8676

>NTDB_id=296475 EQH31_RS06285 WP_001082058.1 1232829..1233275(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_1901938]
MNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISEMGSNISGGQRQQIALARALINNPSIVILDEATSA
LDTINEERITKYIQSQGCTQIIIAHRLSTIKDADIIFVMKGGKIVESGNHKYLITLGGEYYSLYTKRK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=296475 EQH31_RS06285 WP_001082058.1 1232829..1233275(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_1901938]
TTGAACCGAAGTATTCTTGATAATATAACTTTAAAGCACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGT
TCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTG
GGCAAAGGCAACAGATAGCACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCA
TTAGACACTATTAATGAGGAAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATT
GTCAACGATTAAGGATGCGGATATTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAA
TAACTCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

45.833

97.297

0.446
  comA Streptococcus gordonii str. Challis substr. CH1

44.218

99.324

0.439
  comA Streptococcus mitis NCTC 12261

42.759

97.973

0.419
  comA Streptococcus mitis SK321

42.069

97.973

0.412
  comA Streptococcus pneumoniae Rx1

41.379

97.973

0.405
  comA Streptococcus pneumoniae D39

41.379

97.973

0.405
  comA Streptococcus pneumoniae R6

41.379

97.973

0.405
  comA Streptococcus pneumoniae TIGR4

41.379

97.973

0.405
  rcrQ Streptococcus mutans UA159

39.13

93.243

0.365

Multiple sequence alignment