Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LHV_RS03610 Genome accession   NC_010080
Coordinates   693483..694580 (+) Length   365 a.a.
NCBI ID   WP_012211605.1    Uniprot ID   U6F7Q4
Organism   Lactobacillus helveticus DPC 4571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 688483..699580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHV_RS03590 (lhv_0709) - 689545..690801 (+) 1257 WP_003625998.1 M16 family metallopeptidase -
  LHV_RS03595 (lhv_0710) ymfI 690802..691530 (+) 729 WP_003633413.1 elongation factor P 5-aminopentanone reductase -
  LHV_RS03600 (lhv_0711) - 691598..692716 (+) 1119 WP_012211603.1 helix-turn-helix domain-containing protein -
  LHV_RS03605 (lhv_0712) pgsA 692739..693299 (+) 561 WP_012211604.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LHV_RS03610 (lhv_0713) recA 693483..694580 (+) 1098 WP_012211605.1 recombinase RecA Machinery gene
  LHV_RS03615 (lhv_0714) rny 694699..696330 (+) 1632 WP_012211606.1 ribonuclease Y -
  LHV_RS03620 (lhv_0715) - 696438..697595 (+) 1158 WP_012211607.1 glycosyltransferase family 4 protein -
  LHV_RS03625 (lhv_0716) - 697622..698284 (-) 663 WP_012211608.1 YigZ family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39493.08 Da        Isoelectric Point: 8.8688

>NTDB_id=29564 LHV_RS03610 WP_012211605.1 693483..694580(+) (recA) [Lactobacillus helveticus DPC 4571]
MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEDHPDIYQDIQ
QQVRQAYGIDKKSVADREDPEKIKKKREEAKAEKTAETKKATDDK

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=29564 LHV_RS03610 WP_012211605.1 693483..694580(+) (recA) [Lactobacillus helveticus DPC 4571]
ATGGCCAAAGATGAAAAAAAGGCTGCTTTAGATGCAGCGCTCAAAAAAATCGAAAAGAACTTTGGTAAGGGTGCTGTTAT
GCGTATGGGTGAAAAAGCTGATACCCAAATTTCAACAGTTCCAACAGGTTCACTTGCTTTAGATGCTGCTATTGGTGTTG
GCGGCTATCCTCGAGGACGTATTATTGAAGTATATGGACCTGAATCATCTGGTAAAACCACTGTTGCTCTTCATGCAGTA
GCTGAAGTACAAAAACGTGGTGGTACAGCCGCTTATATTGATGCAGAAAATGCAATGGATCCAGCATATGCTGAAGCATT
AGGTGTAGACATTGATTCACTTATTTTATCTCAACCTAATACAGGTGAAGAAGGTTTACAAATTGCTGATACTTTAATTT
CTAGTGGTGCCATTGATATTGTGGTAGTTGACTCTGTTGCAGCGTTAGTTCCACGTGCTGAAATTGAAGGCGAGATGGGG
GATGCTCATGTTGGTCTTCAAGCTCGATTAATGAGTCAGGCTTTGCGTAAATTATCTGGTACTATTTCAAAGACTAAGAC
CATTGCAATTTTTATTAATCAGATTCGTGAAAAAGTTGGGATTATGTTTGGTAACCCAGAAACTACTCCAGGTGGTCGTG
CTCTTAAGTTTTATTCAACTATTCGACTTGAAGTAAGAAGAGCAGAACAGATCAAGCAATCTGGTGATGTGATTGGTAAC
CGTGTCAAGATTAAAGTAGTGAAGAACAAGGTTGCTCCACCATTTAAGGTAGCTGAAGTAGATATCATGTATGGTAAAGG
TATTTCCCAAAGTGGAGAATTGCTTGATATGGCCGCTGACAAGGATATTATTGATAAAGCTGGATCATGGTATTCATACA
AGAGTGATCGGATCGGTCAAGGACGAGAAAATGCTAAGAAATATCTTGAAGATCATCCAGATATCTATCAAGATATTCAA
CAACAAGTTCGTCAAGCATACGGCATTGATAAAAAATCAGTAGCTGATCGTGAGGATCCTGAAAAAATAAAGAAAAAACG
CGAAGAAGCAAAAGCAGAGAAGACTGCAGAAACTAAAAAGGCAACTGATGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U6F7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.067

90.137

0.74
  recA Bacillus subtilis subsp. subtilis str. 168

72.727

90.411

0.658
  recA Streptococcus mutans UA159

66.011

97.534

0.644
  recA Streptococcus pneumoniae R6

65.826

97.808

0.644
  recA Streptococcus pneumoniae TIGR4

65.826

97.808

0.644
  recA Streptococcus pneumoniae Rx1

65.826

97.808

0.644
  recA Streptococcus pneumoniae D39

65.826

97.808

0.644
  recA Streptococcus mitis NCTC 12261

67.251

93.699

0.63
  recA Streptococcus pyogenes NZ131

69.301

90.137

0.625
  recA Streptococcus mitis SK321

68.389

90.137

0.616
  recA Lactococcus lactis subsp. cremoris KW2

65.957

90.137

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

89.863

0.542
  recA Neisseria gonorrhoeae MS11

59.756

89.863

0.537
  recA Neisseria gonorrhoeae strain FA1090

59.756

89.863

0.537
  recA Neisseria gonorrhoeae MS11

59.756

89.863

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.227

92.877

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

88.493

0.526
  recA Acinetobacter baumannii D1279779

59.133

88.493

0.523
  recA Acinetobacter baylyi ADP1

59.006

88.219

0.521
  recA Pseudomonas stutzeri DSM 10701

58.879

87.945

0.518
  recA Helicobacter pylori 26695

55.263

93.699

0.518
  recA Helicobacter pylori strain NCTC11637

55.263

93.699

0.518
  recA Glaesserella parasuis strain SC1401

53.276

96.164

0.512
  recA Ralstonia pseudosolanacearum GMI1000

58.147

85.753

0.499
  recA Vibrio cholerae O1 biovar El Tor strain E7946

55.901

88.219

0.493
  recA Vibrio cholerae strain A1552

55.901

88.219

0.493

Multiple sequence alignment