Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | SBAL195_RS20970 | Genome accession | NC_009997 |
| Coordinates | 4795799..4796713 (+) | Length | 304 a.a. |
| NCBI ID | WP_006084370.1 | Uniprot ID | A9L5C8 |
| Organism | Shewanella baltica OS195 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4784525..4834002 | 4795799..4796713 | within | 0 |
Gene organization within MGE regions
Location: 4784525..4834002
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBAL195_RS20930 (Sbal195_4054) | aceE | 4784974..4787640 (-) | 2667 | WP_006083344.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
| SBAL195_RS20935 (Sbal195_4055) | pdhR | 4787722..4788474 (-) | 753 | WP_006083345.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| SBAL195_RS20940 (Sbal195_4056) | ampE | 4788714..4789565 (-) | 852 | WP_006083346.1 | beta-lactamase regulator AmpE | - |
| SBAL195_RS20945 (Sbal195_4057) | ampD | 4789635..4790198 (-) | 564 | WP_012197706.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| SBAL195_RS20950 (Sbal195_4058) | nadC | 4790469..4791350 (+) | 882 | WP_006083348.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| SBAL195_RS20955 (Sbal195_4059) | - | 4792067..4792522 (+) | 456 | WP_006084367.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| SBAL195_RS20960 (Sbal195_4060) | pilB | 4792628..4794340 (+) | 1713 | WP_006084368.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SBAL195_RS20965 (Sbal195_4061) | pilC | 4794489..4795760 (+) | 1272 | WP_006084369.1 | type II secretion system F family protein | Machinery gene |
| SBAL195_RS20970 (Sbal195_4062) | pilD | 4795799..4796713 (+) | 915 | WP_006084370.1 | A24 family peptidase | Machinery gene |
| SBAL195_RS20975 (Sbal195_4063) | coaE | 4796753..4797370 (+) | 618 | WP_006084371.1 | dephospho-CoA kinase | - |
| SBAL195_RS20980 (Sbal195_4064) | zapD | 4797363..4798097 (+) | 735 | WP_006084372.1 | cell division protein ZapD | - |
| SBAL195_RS20985 (Sbal195_4065) | yacG | 4798171..4798380 (+) | 210 | WP_006083355.1 | DNA gyrase inhibitor YacG | - |
| SBAL195_RS20990 (Sbal195_4066) | mutT | 4798457..4798849 (+) | 393 | WP_006084373.1 | 8-oxo-dGTP diphosphatase MutT | - |
| SBAL195_RS20995 (Sbal195_4067) | - | 4799406..4799942 (+) | 537 | WP_006084374.1 | thioredoxin family protein | - |
| SBAL195_RS21000 (Sbal195_4068) | - | 4800007..4800933 (-) | 927 | WP_006084375.1 | exopolyphosphatase | - |
| SBAL195_RS21005 (Sbal195_4069) | rhlB | 4800934..4802250 (-) | 1317 | WP_006084377.1 | ATP-dependent RNA helicase RhlB | - |
| SBAL195_RS21010 (Sbal195_4070) | trxA | 4802403..4802729 (+) | 327 | WP_006083360.1 | thioredoxin TrxA | - |
| SBAL195_RS21015 (Sbal195_4071) | rho | 4802939..4804204 (+) | 1266 | WP_006083361.1 | transcription termination factor Rho | - |
| SBAL195_RS21020 (Sbal195_4072) | - | 4804260..4805186 (-) | 927 | WP_006084378.1 | LysR family transcriptional regulator | - |
| SBAL195_RS21025 (Sbal195_4073) | - | 4805321..4806343 (+) | 1023 | WP_006084380.1 | zinc-binding alcohol dehydrogenase family protein | - |
| SBAL195_RS21030 (Sbal195_4074) | - | 4806340..4806624 (+) | 285 | WP_006084381.1 | putative quinol monooxygenase | - |
| SBAL195_RS21035 (Sbal195_4075) | - | 4806673..4807404 (-) | 732 | WP_006084382.1 | fumarate reductase iron-sulfur subunit | - |
| SBAL195_RS21040 (Sbal195_4076) | - | 4807404..4809410 (-) | 2007 | WP_012197707.1 | fumarate reductase flavoprotein subunit | - |
| SBAL195_RS21045 (Sbal195_4077) | - | 4809520..4810191 (-) | 672 | WP_006084385.1 | fumarate reductase cytochrome b subunit | - |
| SBAL195_RS21050 (Sbal195_4078) | - | 4810364..4811086 (-) | 723 | WP_006084386.1 | fumarate reductase cytochrome b subunit | - |
| SBAL195_RS21055 (Sbal195_4079) | prmA | 4811471..4812352 (+) | 882 | WP_012197708.1 | 50S ribosomal protein L11 methyltransferase | - |
| SBAL195_RS21060 (Sbal195_4080) | dusB | 4812527..4813495 (+) | 969 | WP_006083370.1 | tRNA dihydrouridine synthase DusB | - |
| SBAL195_RS21065 (Sbal195_4081) | fis | 4813512..4813817 (+) | 306 | WP_006083371.1 | DNA-binding transcriptional regulator Fis | - |
| SBAL195_RS21070 (Sbal195_4082) | - | 4814160..4817150 (+) | 2991 | WP_012197709.1 | UvrD-helicase domain-containing protein | - |
| SBAL195_RS21075 (Sbal195_4083) | ric | 4817379..4818188 (+) | 810 | WP_012197710.1 | iron-sulfur cluster repair di-iron protein | - |
| SBAL195_RS21080 (Sbal195_4084) | - | 4818321..4818824 (+) | 504 | WP_012197711.1 | helix-turn-helix domain-containing protein | - |
| SBAL195_RS21085 (Sbal195_4085) | - | 4818854..4819432 (-) | 579 | WP_012090405.1 | HupE/UreJ family protein | - |
| SBAL195_RS21090 (Sbal195_4086) | - | 4819556..4820287 (-) | 732 | WP_006083419.1 | HAD-IA family hydrolase | - |
| SBAL195_RS21095 (Sbal195_4087) | xerC | 4820287..4821207 (-) | 921 | WP_012197712.1 | tyrosine recombinase XerC | - |
| SBAL195_RS21100 (Sbal195_4088) | - | 4821265..4821894 (-) | 630 | WP_011848049.1 | DUF484 family protein | - |
| SBAL195_RS21105 (Sbal195_4089) | dapF | 4821891..4822718 (-) | 828 | WP_006083422.1 | diaminopimelate epimerase | - |
| SBAL195_RS21110 (Sbal195_4090) | lysA | 4822794..4824038 (-) | 1245 | WP_006084396.1 | diaminopimelate decarboxylase | - |
| SBAL195_RS21115 (Sbal195_4091) | - | 4824102..4824293 (-) | 192 | WP_006083425.1 | LPS translocon maturation chaperone LptM | - |
| SBAL195_RS21120 (Sbal195_4092) | cyaY | 4824373..4824702 (+) | 330 | WP_006083426.1 | iron donor protein CyaY | - |
| SBAL195_RS21125 (Sbal195_4093) | - | 4824787..4827198 (-) | 2412 | WP_012197714.1 | class I adenylate cyclase | - |
| SBAL195_RS21130 (Sbal195_4094) | hemC | 4827401..4828333 (+) | 933 | WP_012197715.1 | hydroxymethylbilane synthase | - |
| SBAL195_RS21135 (Sbal195_4095) | - | 4828338..4829078 (+) | 741 | WP_012197716.1 | uroporphyrinogen-III synthase | - |
| SBAL195_RS21140 (Sbal195_4096) | - | 4829139..4830320 (+) | 1182 | WP_012197717.1 | uroporphyrinogen-III C-methyltransferase | - |
| SBAL195_RS21145 (Sbal195_4097) | - | 4830317..4831483 (+) | 1167 | WP_012197718.1 | heme biosynthesis HemY N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 304 a.a. Molecular weight: 33973.52 Da Isoelectric Point: 7.7253
>NTDB_id=29459 SBAL195_RS20970 WP_006084370.1 4795799..4796713(+) (pilD) [Shewanella baltica OS195]
MSEFISILGQHPYLFMALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKKIGIDQLNKPIDAFPEKY
NLVVPGSACPKCKTSIKPWHNLPVLGWLMLKGKCAACHAPISARYPIIEFITGLLIATLAWHFGPSWQFVFASILTFVLV
ALTGIDLDEMLLPDQMTLPLLWLGLIINLNHIFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAW
LGWQMLPLVILLSSLVAAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL
MSEFISILGQHPYLFMALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKKIGIDQLNKPIDAFPEKY
NLVVPGSACPKCKTSIKPWHNLPVLGWLMLKGKCAACHAPISARYPIIEFITGLLIATLAWHFGPSWQFVFASILTFVLV
ALTGIDLDEMLLPDQMTLPLLWLGLIINLNHIFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAW
LGWQMLPLVILLSSLVAAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL
Nucleotide
Download Length: 915 bp
>NTDB_id=29459 SBAL195_RS20970 WP_006084370.1 4795799..4796713(+) (pilD) [Shewanella baltica OS195]
ATGTCAGAATTCATCTCCATTTTGGGCCAGCACCCTTATCTTTTTATGGCTCTAAGCTTTATTTTTGCCGCTACCATTGG
TAGTTTTTTAAATGTGGTGATCCACAGATTTCCTGTGATGATGAAACGGGAGTGGCAGCAAGAATGTAATCAGTATTTAC
AGGAATACCACGAAGACATAGTCAAAAAAATAGGGATAGACCAACTCAATAAACCTATAGATGCCTTCCCTGAAAAGTAT
AATCTTGTTGTGCCGGGCTCAGCCTGCCCTAAGTGCAAAACGTCGATTAAACCTTGGCATAATTTACCCGTATTAGGCTG
GTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCCCCTATTTCTGCTCGCTACCCCATTATTGAATTCATCACAGGGC
TACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTGTTTTTGCGAGCATACTCACCTTTGTGCTTGTA
GCACTGACAGGTATCGATCTTGATGAGATGTTGCTCCCCGACCAAATGACGCTACCGTTGCTTTGGCTCGGCTTGATAAT
CAATTTAAATCATATCTTTGCGAGCCCAACCGATGCCATTATCGGTGCGGCGGCAGGCTATTTGAGTCTATGGTCCATTT
TCTGGTTGTTTAAAATCCTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTTAAATTACTCGCCGTGTTCGGTGCTTGG
CTTGGCTGGCAAATGCTGCCACTGGTGATTTTACTTTCGTCCCTCGTTGCCGCAGTCGTTGGCATCACTATGATTGTTAG
TAAACGCCTGAAACAAGGGAATCCAATTCCATTTGGCCCCTATATTGCTGCCGCAGGCTGGATAGCCTTGCTATTTGGAC
AGCAGATTGTCGATTGGTACCTATCAACACTGTAA
ATGTCAGAATTCATCTCCATTTTGGGCCAGCACCCTTATCTTTTTATGGCTCTAAGCTTTATTTTTGCCGCTACCATTGG
TAGTTTTTTAAATGTGGTGATCCACAGATTTCCTGTGATGATGAAACGGGAGTGGCAGCAAGAATGTAATCAGTATTTAC
AGGAATACCACGAAGACATAGTCAAAAAAATAGGGATAGACCAACTCAATAAACCTATAGATGCCTTCCCTGAAAAGTAT
AATCTTGTTGTGCCGGGCTCAGCCTGCCCTAAGTGCAAAACGTCGATTAAACCTTGGCATAATTTACCCGTATTAGGCTG
GTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCCCCTATTTCTGCTCGCTACCCCATTATTGAATTCATCACAGGGC
TACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTGTTTTTGCGAGCATACTCACCTTTGTGCTTGTA
GCACTGACAGGTATCGATCTTGATGAGATGTTGCTCCCCGACCAAATGACGCTACCGTTGCTTTGGCTCGGCTTGATAAT
CAATTTAAATCATATCTTTGCGAGCCCAACCGATGCCATTATCGGTGCGGCGGCAGGCTATTTGAGTCTATGGTCCATTT
TCTGGTTGTTTAAAATCCTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTTAAATTACTCGCCGTGTTCGGTGCTTGG
CTTGGCTGGCAAATGCTGCCACTGGTGATTTTACTTTCGTCCCTCGTTGCCGCAGTCGTTGGCATCACTATGATTGTTAG
TAAACGCCTGAAACAAGGGAATCCAATTCCATTTGGCCCCTATATTGCTGCCGCAGGCTGGATAGCCTTGCTATTTGGAC
AGCAGATTGTCGATTGGTACCTATCAACACTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
50.676 |
97.368 |
0.493 |
| pilD | Vibrio campbellii strain DS40M4 |
48.505 |
99.013 |
0.48 |
| pilD | Acinetobacter baumannii D1279779 |
48.789 |
95.066 |
0.464 |
| pilD | Acinetobacter nosocomialis M2 |
48.789 |
95.066 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
43.945 |
95.066 |
0.418 |