Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DLJ56_RS05965 Genome accession   NZ_CP029629
Coordinates   1129181..1129867 (+) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MOK063     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124181..1134867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ56_RS05930 (DLJ56_05930) yqeH 1124708..1125808 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  DLJ56_RS05935 (DLJ56_05935) aroE 1125822..1126628 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  DLJ56_RS05940 (DLJ56_05940) yhbY 1126632..1126922 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  DLJ56_RS05945 (DLJ56_05945) nadD 1126925..1127494 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DLJ56_RS05950 (DLJ56_05950) yqeK 1127484..1128068 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DLJ56_RS05955 (DLJ56_05955) rsfS 1128069..1128422 (+) 354 WP_001088020.1 ribosome silencing factor -
  DLJ56_RS05960 (DLJ56_05960) - 1128425..1129141 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  DLJ56_RS05965 (DLJ56_05965) comEA 1129181..1129867 (+) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  DLJ56_RS05970 (DLJ56_05970) - 1129959..1130420 (+) 462 WP_000439693.1 ComE operon protein 2 -
  DLJ56_RS05975 (DLJ56_05975) comEC 1130425..1132626 (+) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DLJ56_RS05980 (DLJ56_05980) holA 1132683..1133657 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  DLJ56_RS05985 (DLJ56_05985) rpsT 1133702..1133953 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=294389 DLJ56_RS05965 WP_072353822.1 1129181..1129867(+) (comEA) [Staphylococcus aureus strain MOK063]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=294389 DLJ56_RS05965 WP_072353822.1 1129181..1129867(+) (comEA) [Staphylococcus aureus strain MOK063]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment