Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DLK06_RS08875 Genome accession   NZ_CP029610
Coordinates   1803244..1804290 (-) Length   348 a.a.
NCBI ID   WP_002115680.1    Uniprot ID   A0A009HJZ5
Organism   Acinetobacter pittii strain ST220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798244..1809290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS08840 (DLK06_08850) ompH 1798491..1798991 (+) 501 WP_002115728.1 OmpH family outer membrane protein -
  DLK06_RS08845 (DLK06_08855) lpxD 1798996..1800066 (+) 1071 WP_002115634.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  DLK06_RS08850 (DLK06_08860) fabZ 1800073..1800558 (+) 486 WP_002115603.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DLK06_RS08855 (DLK06_08865) lpxA 1800555..1801343 (+) 789 WP_005068909.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  DLK06_RS08860 (DLK06_08870) - 1801402..1802277 (-) 876 WP_002115714.1 YbgF trimerization domain-containing protein -
  DLK06_RS08870 (DLK06_08880) recX 1802702..1803184 (-) 483 WP_032055916.1 regulatory protein RecX -
  DLK06_RS08875 (DLK06_08885) recA 1803244..1804290 (-) 1047 WP_002115680.1 recombinase RecA Machinery gene
  DLK06_RS08880 (DLK06_08890) hslR 1804436..1804864 (-) 429 WP_005068915.1 RNA-binding S4 domain-containing protein -
  DLK06_RS08885 (DLK06_08895) yrfG 1804848..1805534 (-) 687 WP_032055918.1 HAD-IA family hydrolase -
  DLK06_RS08890 (DLK06_08900) - 1805958..1806251 (+) 294 WP_023187860.1 hypothetical protein -
  DLK06_RS08895 (DLK06_08905) - 1806289..1806825 (-) 537 WP_005068924.1 GNAT family N-acetyltransferase -
  DLK06_RS08900 (DLK06_08910) gigD 1806854..1807303 (-) 450 WP_004791887.1 Lrp/AsnC family transcriptional regulator GigD -
  DLK06_RS08905 (DLK06_08915) kynU 1807451..1808701 (+) 1251 WP_032070666.1 kynureninase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37679.11 Da        Isoelectric Point: 4.9278

>NTDB_id=294189 DLK06_RS08875 WP_002115680.1 1803244..1804290(-) (recA) [Acinetobacter pittii strain ST220]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
IIREQLLTTGTNGAVQVEDEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=294189 DLK06_RS08875 WP_002115680.1 1803244..1804290(-) (recA) [Acinetobacter pittii strain ST220]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAGCAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAAATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCAGAACACGCATTAGATCCACAATATGCACGTAAGCTGGG
CGTGGACATTGATAATCTACTTGTATCGCAACCAGATAACGGTGAACAAGCACTCGAGATTGCAGACATGCTAGTTCGCT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTACAAGCTCGCTTAATGAGTCAGGCATTACGTAAAATTACGGGTAACGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAGACTACGACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAGGTCAAAGAAGGTGATGAAATCATCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCCTTTAAAGAAGCTATTTTCCAAATCCTATACGGTAAAGGTAC
AAACCAGCTTGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGCGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTTATCCGCCACTTTGAAGAAAATCCTCAAATGGCTGGAGAAATTGAAAAG
ATTATCCGTGAACAACTGCTAACTACGGGTACTAATGGTGCTGTACAAGTGGAAGATGAAGAAGAAGATCTTCTATTAGA
GTCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HJZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.562

100

0.968
  recA Acinetobacter baylyi ADP1

92.837

100

0.931
  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721
  recA Vibrio cholerae strain A1552

74.006

93.966

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695
  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67
  recA Neisseria gonorrhoeae MS11

66.092

100

0.661
  recA Neisseria gonorrhoeae MS11

66.092

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

66.092

100

0.661
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.563

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Streptococcus mitis SK321

59.531

97.989

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583
  recA Streptococcus mitis NCTC 12261

57.183

100

0.583
  recA Streptococcus mutans UA159

61.89

94.253

0.583
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Streptococcus pneumoniae D39

61.043

93.678

0.572
  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572
  recA Streptococcus pneumoniae R6

61.043

93.678

0.572
  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546

Multiple sequence alignment