Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DLD54_RS00040 | Genome accession | NZ_CP029544 |
| Coordinates | 9826..10335 (+) | Length | 169 a.a. |
| NCBI ID | WP_038520442.1 | Uniprot ID | A0A0F4M5U6 |
| Organism | Lactobacillus helsingborgensis strain ESL0183 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4826..15335
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLD54_RS00030 (DLD54_00030) | gyrA | 6786..9272 (+) | 2487 | WP_109917808.1 | DNA gyrase subunit A | - |
| DLD54_RS00035 (DLD54_00035) | rpsF | 9478..9771 (+) | 294 | WP_034978626.1 | 30S ribosomal protein S6 | - |
| DLD54_RS00040 (DLD54_00040) | ssb | 9826..10335 (+) | 510 | WP_038520442.1 | single-stranded DNA-binding protein | Machinery gene |
| DLD54_RS00045 (DLD54_00045) | rpsR | 10358..10597 (+) | 240 | WP_038520445.1 | 30S ribosomal protein S18 | - |
| DLD54_RS00050 (DLD54_00050) | - | 10880..12901 (+) | 2022 | WP_109917809.1 | DHH family phosphoesterase | - |
| DLD54_RS00055 (DLD54_00055) | rplI | 12914..13369 (+) | 456 | WP_038520452.1 | 50S ribosomal protein L9 | - |
| DLD54_RS00060 (DLD54_00060) | dnaB | 13406..14785 (+) | 1380 | WP_038520455.1 | replicative DNA helicase | - |
| DLD54_RS00065 (DLD54_00065) | - | 14955..15113 (+) | 159 | WP_109585634.1 | CsbD family protein | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18603.26 Da Isoelectric Point: 4.6034
>NTDB_id=293380 DLD54_RS00040 WP_038520442.1 9826..10335(+) (ssb) [Lactobacillus helsingborgensis strain ESL0183]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
NYDNKDGQRVYVTEVIVDNFSLLESRKDREARGQNGGYTPNNNGNYGNQNTNNNPNMGTPNQNNGLDNTQDPFAGSGDTI
DISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
NYDNKDGQRVYVTEVIVDNFSLLESRKDREARGQNGGYTPNNNGNYGNQNTNNNPNMGTPNQNNGLDNTQDPFAGSGDTI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=293380 DLD54_RS00040 WP_038520442.1 9826..10335(+) (ssb) [Lactobacillus helsingborgensis strain ESL0183]
ATGATTAACAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCCGTCGATCGTCAATATACTAACGCTCAAGGTGAGAGAGGTGCAGATTTTATCAGTTGTGTCATTT
GGCGCAAAGCAGCAGAAAATTTCTGTAATTTTACGTCTAAAGGTTCACTTGTTGGTATTGATGGCCGAATTCAAACCAGA
AACTACGATAATAAAGACGGGCAAAGAGTATATGTAACGGAAGTTATCGTTGATAATTTCTCATTGCTTGAATCACGTAA
AGATCGTGAAGCCCGTGGTCAAAATGGTGGTTACACACCAAATAATAATGGTAATTATGGTAATCAAAATACCAATAACA
ATCCTAATATGGGTACGCCAAACCAGAACAATGGCCTAGATAATACTCAGGATCCATTTGCCGGTTCAGGCGATACCATT
GATATTTCTGATGATGATTTACCATTCTAA
ATGATTAACAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCCGTCGATCGTCAATATACTAACGCTCAAGGTGAGAGAGGTGCAGATTTTATCAGTTGTGTCATTT
GGCGCAAAGCAGCAGAAAATTTCTGTAATTTTACGTCTAAAGGTTCACTTGTTGGTATTGATGGCCGAATTCAAACCAGA
AACTACGATAATAAAGACGGGCAAAGAGTATATGTAACGGAAGTTATCGTTGATAATTTCTCATTGCTTGAATCACGTAA
AGATCGTGAAGCCCGTGGTCAAAATGGTGGTTACACACCAAATAATAATGGTAATTATGGTAATCAAAATACCAATAACA
ATCCTAATATGGGTACGCCAAACCAGAACAATGGCCTAGATAATACTCAGGATCCATTTGCCGGTTCAGGCGATACCATT
GATATTTCTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.584 |
100 |
0.651 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.55 |