Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   EQI56_RS03675 Genome accession   NZ_CP035165
Coordinates   712866..713996 (+) Length   376 a.a.
NCBI ID   WP_041851216.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103881     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 707866..718996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS03660 (EQI56_03660) atxF 708983..709438 (-) 456 WP_072173434.1 TIGR01741 family protein -
  EQI56_RS03665 (EQI56_03665) yeeF 709458..711467 (-) 2010 WP_041851218.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  EQI56_RS03670 (EQI56_03670) - 711680..712702 (+) 1023 WP_041851217.1 hypothetical protein -
  EQI56_RS03675 (EQI56_03675) rapC 712866..713996 (+) 1131 WP_041851216.1 response regulator aspartate phosphatase RapH Regulator
  EQI56_RS03680 (EQI56_03680) phrH 713986..714159 (+) 174 WP_041851215.1 phosphatase RapH inhibitor PhrH -
  EQI56_RS03685 (EQI56_03685) yeeI 714319..715038 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQI56_RS03690 (EQI56_03690) - 715172..715600 (+) 429 WP_128472210.1 spore coat protein -
  EQI56_RS03695 (EQI56_03695) yezE 715713..716297 (+) 585 WP_041851250.1 TetR/AcrR family transcriptional regulator -
  EQI56_RS03700 (EQI56_03700) yesE 716377..716820 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  EQI56_RS03705 (EQI56_03705) yesF 716817..717685 (+) 869 Protein_670 NAD-dependent epimerase/dehydratase family protein -
  EQI56_RS03710 (EQI56_03710) cotJA 717812..718060 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  EQI56_RS03715 (EQI56_03715) cotJB 718044..718307 (+) 264 WP_003219491.1 spore coat protein CotJB -
  EQI56_RS03720 (EQI56_03720) cotJC 718322..718891 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43962.34 Da        Isoelectric Point: 6.3903

>NTDB_id=293114 EQI56_RS03675 WP_041851216.1 712866..713996(+) (rapC) [Bacillus subtilis strain SRCM103881]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQRMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLESIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLGAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAATVFESSCHFEQAAKFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=293114 EQI56_RS03675 WP_041851216.1 712866..713996(+) (rapC) [Bacillus subtilis strain SRCM103881]
TTGAGTCAAGCCATACCGTCTTCGCGTGTCGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAGGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAATCGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGGGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAAATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCACTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTAAGTTTTACCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.257

100

0.394