Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B7L90_RS09190 Genome accession   NZ_CP029473
Coordinates   1881195..1881485 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain Hx05     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1876195..1886485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L90_RS09175 (B7L90_19575) - 1876418..1877743 (-) 1326 WP_095324173.1 G5 and 3D domain-containing protein -
  B7L90_RS09180 (B7L90_19580) - 1877878..1878645 (-) 768 WP_025854081.1 TatD family hydrolase -
  B7L90_RS09185 (B7L90_19585) metG 1878721..1880712 (-) 1992 WP_025854082.1 methionine--tRNA ligase -
  B7L90_RS09190 (B7L90_19590) abrB 1881195..1881485 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  B7L90_RS09195 (B7L90_19595) rsmI 1881535..1882416 (-) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B7L90_RS09200 (B7L90_19600) - 1882391..1882690 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  B7L90_RS09205 (B7L90_19605) - 1882677..1883420 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B7L90_RS09210 (B7L90_19610) yabA 1883481..1883840 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  B7L90_RS09215 (B7L90_19615) ricT 1883855..1884682 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  B7L90_RS09220 (B7L90_19620) holB 1884685..1885674 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  B7L90_RS09225 (B7L90_19625) - 1885686..1886126 (-) 441 WP_004264730.1 DUF327 family protein -
  B7L90_RS09230 (B7L90_19630) darA 1886139..1886468 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=292932 B7L90_RS09190 WP_169510469.1 1881195..1881485(+) (abrB) [Bacillus velezensis strain Hx05]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=292932 B7L90_RS09190 WP_169510469.1 1881195..1881485(+) (abrB) [Bacillus velezensis strain Hx05]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGTAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment