Detailed information NTG0292845

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: DKG78_RS18080
• Genome accession: NZ_CP029466
• Coordinates: 3663303..3664448 (+)
• Length: 381 a.a.
• NCBI ID: WP_132105651.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HM618
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3658303..3669448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKG78_RS18060 (DKG78_18365)	-	3659205..3659633 (-)	429	WP_007407634.1	DUF1934 domain-containing protein	-
DKG78_RS18065 (DKG78_18370)	-	3659787..3660297 (+)	511	Protein_3529	bacteriocin biosynthesis protein AlbG	-
DKG78_RS18070 (DKG78_18375)	-	3660304..3661677 (-)	1374	WP_192452724.1	YncE family protein	-
DKG78_RS18075 (DKG78_18380)	-	3661717..3663072 (-)	1356	WP_192452725.1	YncE family protein	-
DKG78_RS18080 (DKG78_18390)	rapF	3663303..3664448 (+)	1146	WP_132105651.1	tetratricopeptide repeat protein	Regulator
DKG78_RS18085 (DKG78_18395)	-	3664432..3664551 (+)	120	WP_129091332.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
DKG78_RS18090 (DKG78_18400)	speB	3664674..3665546 (-)	873	WP_007614448.1	agmatinase	-
DKG78_RS18095 (DKG78_18405)	speE	3665605..3666435 (-)	831	WP_192452726.1	spermidine synthase	-
DKG78_RS18100 (DKG78_18410)	-	3666635..3668707 (+)	2073	WP_076424675.1	transglycosylase domain-containing protein	-
DKG78_RS18105 (DKG78_18415)	-	3668732..3669163 (-)	432	WP_015240782.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45724.30 Da
• Isoelectric Point: 5.2513

>NTDB_id=292845 DKG78_RS18080 WP_132105651.1 3663303..3664448(+) (rapF) [Bacillus amyloliquefaciens strain HM618]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDKAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=292845 DKG78_RS18080 WP_132105651.1 3663303..3664448(+) (rapF) [Bacillus amyloliquefaciens strain HM618]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTCTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAAAGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTGTATATGCCGGATCCAAGAGATACATTAATA
AATGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_8) (265-293)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.604	100	0.706
rapC	Bacillus subtilis subsp. subtilis str. 168	53.947	99.738	0.538