Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DKG76_RS05990 Genome accession   NZ_CP029465
Coordinates   1190636..1191214 (+) Length   192 a.a.
NCBI ID   WP_003239439.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185636..1196214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS05970 (DKG76_05970) hemAT 1186148..1187445 (-) 1298 Protein_1108 heme-based aerotactic transducer HemAT -
  DKG76_RS05975 (DKG76_05975) - 1187585..1189114 (-) 1530 WP_003239444.1 FAD-dependent oxidoreductase -
  DKG76_RS05980 (DKG76_05980) - 1189226..1190083 (+) 858 WP_003239442.1 SDR family oxidoreductase -
  DKG76_RS05985 (DKG76_05985) - 1190110..1190343 (-) 234 WP_003239440.1 IDEAL domain-containing protein -
  DKG76_RS05990 (DKG76_05990) comK 1190636..1191214 (+) 579 WP_003239439.1 competence transcription factor ComK Regulator
  DKG76_RS05995 (DKG76_05995) - 1191260..1192159 (-) 900 WP_003239437.1 SDR family oxidoreductase -
  DKG76_RS06000 (DKG76_06000) - 1192367..1192636 (+) 270 WP_032732146.1 excalibur calcium-binding domain-containing protein -
  DKG76_RS06005 (DKG76_06005) - 1192678..1194147 (-) 1470 WP_003239433.1 sodium:solute symporter -
  DKG76_RS06010 (DKG76_06010) - 1194144..1194344 (-) 201 WP_003239432.1 DUF3311 domain-containing protein -
  DKG76_RS06015 (DKG76_06015) - 1194563..1194925 (-) 363 WP_003239431.1 hypothetical protein -
  DKG76_RS06020 (DKG76_06020) - 1195079..1195702 (+) 624 WP_003239430.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22442.72 Da        Isoelectric Point: 7.7153

>NTDB_id=292712 DKG76_RS05990 WP_003239439.1 1190636..1191214(+) (comK) [Bacillus inaquosorum strain KCTC 13429]
MSQKTDAPLESYEVNGATIAVLPEEIDGKIYSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=292712 DKG76_RS05990 WP_003239439.1 1190636..1191214(+) (comK) [Bacillus inaquosorum strain KCTC 13429]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACGGCGCAACAATTGCTGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTATTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGATAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGCAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCATGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974

Multiple sequence alignment