Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AYP37_RS05505 Genome accession   NZ_CP034797
Coordinates   910627..912054 (+) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli strain 08-3918     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 905627..917054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP37_RS05465 yeeW 905810..906004 (+) 195 WP_000988600.1 DUF5983 family protein -
  AYP37_RS05470 - 906038..906130 (+) 93 Protein_944 hypothetical protein -
  AYP37_RS28915 - 906419..906556 (-) 138 Protein_945 transposase domain-containing protein -
  AYP37_RS29510 - 906619..906801 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  AYP37_RS05485 tmaR 906902..907231 (-) 330 WP_000450409.1 DUF496 family protein -
  AYP37_RS05490 yeeA 907403..908461 (-) 1059 WP_001202488.1 FUSC family protein -
  AYP37_RS05495 sbmC 908660..909133 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  AYP37_RS05500 dacD 909252..910418 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AYP37_RS05505 sbcB 910627..912054 (+) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  AYP37_RS05510 tsuB 912097..912324 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AYP37_RS05515 tsuA 912338..913396 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  AYP37_RS05520 plaP 913575..914933 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AYP37_RS05525 yoeI 914923..914985 (-) 63 WP_010723108.1 membrane protein YoeI -
  AYP37_RS05530 yeeY 915200..916129 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  AYP37_RS05535 yeeZ 916175..916999 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=290973 AYP37_RS05505 WP_000980540.1 910627..912054(+) (sbcB) [Escherichia coli strain 08-3918]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=290973 AYP37_RS05505 WP_000980540.1 910627..912054(+) (sbcB) [Escherichia coli strain 08-3918]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581