Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | DDT10_RS00250 | Genome accession | NZ_CP029071 |
| Coordinates | 45959..46249 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain ALB79 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 40959..51249
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDT10_RS00210 (DDT10_00210) | darA | 40976..41305 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| DDT10_RS00215 (DDT10_00215) | - | 41318..41758 (+) | 441 | WP_004264730.1 | DUF327 family protein | - |
| DDT10_RS00220 (DDT10_00220) | holB | 41770..42759 (+) | 990 | WP_007409919.1 | DNA polymerase III subunit delta' | - |
| DDT10_RS00225 (DDT10_00225) | ricT | 42762..43589 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| DDT10_RS00230 (DDT10_00230) | yabA | 43604..43963 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| DDT10_RS00235 (DDT10_00235) | - | 44024..44767 (+) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| DDT10_RS00240 (DDT10_00240) | - | 44754..45053 (+) | 300 | WP_007409921.1 | GIY-YIG nuclease family protein | - |
| DDT10_RS00245 (DDT10_00245) | rsmI | 45028..45909 (+) | 882 | WP_053573815.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| DDT10_RS00250 (DDT10_00250) | abrB | 45959..46249 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| DDT10_RS00255 (DDT10_00255) | metG | 46733..48724 (+) | 1992 | WP_053573816.1 | methionine--tRNA ligase | - |
| DDT10_RS00260 (DDT10_00260) | - | 48801..49568 (+) | 768 | WP_053573817.1 | TatD family hydrolase | - |
| DDT10_RS00265 (DDT10_00265) | - | 49703..51028 (+) | 1326 | WP_108702423.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=290002 DDT10_RS00250 WP_169510469.1 45959..46249(-) (abrB) [Bacillus amyloliquefaciens strain ALB79]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=290002 DDT10_RS00250 WP_169510469.1 45959..46249(-) (abrB) [Bacillus amyloliquefaciens strain ALB79]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |