Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAALB65_RS13530 Genome accession   NZ_CP029069
Coordinates   2729921..2730673 (-) Length   250 a.a.
NCBI ID   WP_029973370.1    Uniprot ID   A0AAP3YC33
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2724921..2735673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS13505 (BAALB65_13505) mreC 2725357..2726220 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BAALB65_RS13510 (BAALB65_13510) mreB 2726251..2727264 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAALB65_RS13515 (BAALB65_13515) radC 2727356..2728051 (-) 696 WP_007408165.1 DNA repair protein RadC -
  BAALB65_RS13520 (BAALB65_13520) - 2728083..2728652 (-) 570 WP_012118105.1 Maf family protein -
  BAALB65_RS13525 (BAALB65_13525) - 2728793..2729794 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  BAALB65_RS13530 (BAALB65_13530) comC 2729921..2730673 (-) 753 WP_029973370.1 A24 family peptidase Machinery gene
  BAALB65_RS13535 (BAALB65_13535) - 2730813..2732105 (-) 1293 WP_029973369.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BAALB65_RS13540 (BAALB65_13540) - 2732164..2734806 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  BAALB65_RS13545 (BAALB65_13545) - 2735259..2735450 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27257.97 Da        Isoelectric Point: 9.4293

>NTDB_id=289899 BAALB65_RS13530 WP_029973370.1 2729921..2730673(-) (comC) [Bacillus amyloliquefaciens strain ALB65]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTTAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=289899 BAALB65_RS13530 WP_029973370.1 2729921..2730673(-) (comC) [Bacillus amyloliquefaciens strain ALB65]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGACAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576

Multiple sequence alignment